RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CCNT1O60563 726 aaKnown RBP13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 DKC1O60832 514 aaKnown RBP eCLIP13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 CLASP2O75122 1294 aaKnown RBP13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SLITRK3O94933 977 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 GALTP07902 379 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SKIP12755 728 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ZXDAP98168 799 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 AGMOQ6ZNB7 445 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PIK3AP1Q6ZUJ8 805 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 TMEM173Q86WV6 379 aaPredicted RBP13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 EXOC8Q8IYI6 725 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 RNF169Q8NCN4 708 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PRPF31Q8WWY3 499 aaKnown RBP13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 LPPQ93052 612 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SCLT1Q96NL6 688 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 HSD17B14Q9BPX1 270 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 NRDE2Q9H7Z3 1164 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ENTPD7Q9NQZ7 604 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 AGPAT5Q9NUQ2 364 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 TBC1D13Q9NVG8 400 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 RGL1Q9NZL6 768 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ORC3Q9UBD5 711 aaPredicted RBP13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 COL4A3BPQ9Y5P4 624 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 CACNA1HO95180 2353 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 CARNS1A5YM72 827 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 FAM205CA6NFA0 338 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 B4GALT3O60512 393 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 LYPLA2O95372 231 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 XBP1P17861 261 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 TECP42680 631 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ALDH7A1P49419 539 aaKnown RBP13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 RAB27AP51159 221 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 AK2P54819 239 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 LAMTOR4Q0VGL1 99 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 NR5A1Q13285 461 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SMC1AQ14683 1233 aaKnown RBP13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ME3Q16798 604 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 NOMO2Q5JPE7 1267 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 UBXN11Q5T124 520 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 TWF2Q6IBS0 349 aaKnown RBP13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 TRIM67Q6ZTA4 783 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 TMC7Q7Z402 723 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SRGAP1Q7Z6B7 1085 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 DDX53Q86TM3 631 aaKnown RBP13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 BCL7CQ8WUZ0 217 aaPredicted RBP13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 IGSF21Q96ID5 467 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 CEP170P1Q96L14 293 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 NAP1L4Q99733 375 aaKnown RBP13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 LXNQ9BS40 222 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 VN1R3Q9BXE9 311 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ZBP1Q9H171 429 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PIN4Q9Y237 131 aaKnown RBP13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 HCFC2Q9Y5Z7 792 aa13.71□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 INPPL1O15357 1258 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ASAP2O43150 1006 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 GAS2O43903 313 aaKnown RBP13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 LILRB3O75022 631 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 LARGE1O95461 756 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 CTSAP10619 480 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 YWHABP31946 246 aaKnown RBP13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 RFC5P40937 340 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 AFF1P51825 1210 aaKnown RBP13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 POLGP54098 1239 aaPredicted RBP13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 POU5F1BQ06416 359 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ANKRD1Q15327 319 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 CATSPER4Q7RTX7 472 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 FERMT3Q86UX7 667 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 IFNLR1Q8IU57 520 aaPredicted RBP13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 SLFN12Q8IYM2 578 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 SLC7A3Q8WY07 619 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 CASP10Q92851 521 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 GTF3C6Q969F1 213 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 TMEM143Q96AN5 459 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 DYDC2Q96IM9 177 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 FBXL18Q96ME1 805 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 NLRP4Q96MN2 994 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ADAM7Q9H2U9 754 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ZSWIM4Q9H7M6 989 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 XPNPEP1Q9NQW7 623 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 PCDHB2Q9Y5E7 798 aa13.7□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 WNT7AO00755 349 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 DDHD2O94830 711 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 CXCL14O95715 111 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 EFEMP2O95967 443 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 SRGAP2BP0DMP2 458 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 LLGL2Q6P1M3 1020 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 GLB1LQ6UWU2 654 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 OTUD6AQ7L8S5 288 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ZNF280BQ86YH2 543 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 VPS52Q8N1B4 723 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 NECAB1Q8N987 351 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 NSUN7Q8NE18 718 aaKnown RBP13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 SLC22A17Q8WUG5 538 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 PSPC1Q8WXF1 523 aaKnown RBP13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 WASF1Q92558 559 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ASIC4Q96FT7 647 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 TMEM169Q96HH4 297 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 RPGRIP1Q96KN7 1286 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 MFSD14AQ96MC6 490 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 MTMR9Q96QG7 549 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms