RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 AKIP1Q9NQ31 210 aa3.39□□□□□ -1.87
CCDC39-203ENST00000473854 ARHGEF4Q9NR80 690 aa3.39□□□□□ -1.87
CCDC39-203ENST00000473854 POLR3BQ9NW08 1133 aaPredicted RBP3.39□□□□□ -1.87
CCDC39-203ENST00000473854 KCMF1Q9P0J7 381 aa3.39□□□□□ -1.87
CCDC39-203ENST00000473854 R3HCC1Q9Y3T6 440 aaKnown RBP3.39□□□□□ -1.87
CCDC39-203ENST00000473854 MRVI1Q9Y6F6 885 aa3.39□□□□□ -1.87
CCDC39-203ENST00000473854 ASXL2Q76L83 1435 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 BLACEA4D250 179 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 SCDO00767 359 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 RBMXL2O75526 392 aaKnown RBP3.38□□□□□ -1.87
CCDC39-203ENST00000473854 RECKO95980 971 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 IGLV2-14P01704 120 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 KIR2DL3P43628 341 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 VPS72Q15906 364 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 KIAA1614Q5VZ46 1190 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 FAM83AQ86UY5 434 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 NOSTRINQ8IVI9 506 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 CPPED1Q9BRF8 314 aaPredicted RBP3.38□□□□□ -1.87
CCDC39-203ENST00000473854 KRTAP4-4Q9BYR3 166 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 ZNF768Q9H5H4 540 aaKnown RBP3.38□□□□□ -1.87
CCDC39-203ENST00000473854 CAPN10Q9HC96 672 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 TRPM5Q9NZQ8 1165 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 SYNPO2Q9UMS6 1093 aa3.38□□□□□ -1.87
CCDC39-203ENST00000473854 COL3A1P02461 1466 aaPredicted RBP3.38□□□□□ -1.87
CCDC39-203ENST00000473854 AHRRA9YTQ3 701 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 KCNAB3O43448 404 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 PROP1O75360 226 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 SPATA31D3P0C874 917 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 WNT3AP56704 352 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 SEC23AQ15436 765 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 MAN2A1Q16706 1144 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 BEAN1Q3B7T3 259 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 SPATA31D4Q6ZUB0 917 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 BMP8AQ7Z5Y6 402 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 ST13P5Q8NFI4 369 aaPredicted RBP3.37□□□□□ -1.87
CCDC39-203ENST00000473854 OR52N2Q8NGI0 321 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 DYDC2Q96IM9 177 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 EPC1Q9H2F5 836 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 KIAA1586Q9HCI6 787 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.37□□□□□ -1.87
CCDC39-203ENST00000473854 HDAC5Q9UQL6 1122 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 TRAF6Q9Y4K3 522 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 PCDHA8Q9Y5H6 950 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 B3GALT1Q9Y5Z6 326 aa3.37□□□□□ -1.87
CCDC39-203ENST00000473854 NCR1O76036 304 aa3.36□□□□□ -1.87
CCDC39-203ENST00000473854 NDUFA10O95299 355 aa3.36□□□□□ -1.87
CCDC39-203ENST00000473854 SRGAP2CP0DJJ0 459 aa3.36□□□□□ -1.87
CCDC39-203ENST00000473854 DNM2P50570 870 aa3.36□□□□□ -1.87
CCDC39-203ENST00000473854 FOXI1Q12951 378 aa3.36□□□□□ -1.87
CCDC39-203ENST00000473854 LCE1EQ5T753 118 aa3.36□□□□□ -1.87
CCDC39-203ENST00000473854 DOK3Q7L591 496 aa3.36□□□□□ -1.87
CCDC39-203ENST00000473854 BRAPQ7Z569 592 aa3.36□□□□□ -1.87
CCDC39-203ENST00000473854 ZNF384Q8TF68 577 aa3.36□□□□□ -1.87
CCDC39-203ENST00000473854 DLG3Q92796 817 aa3.36□□□□□ -1.87
CCDC39-203ENST00000473854 ZNF669Q96BR6 464 aaPredicted RBP3.36□□□□□ -1.87
CCDC39-203ENST00000473854 IPO9Q96P70 1041 aaKnown RBP3.36□□□□□ -1.87
CCDC39-203ENST00000473854 GZF1Q9H116 711 aaPredicted RBP3.36□□□□□ -1.87
CCDC39-203ENST00000473854 CCSER2Q9H7U1 834 aa3.36□□□□□ -1.87
CCDC39-203ENST00000473854 RASSF10A6NK89 507 aa3.35□□□□□ -1.87
CCDC39-203ENST00000473854 KCNK3O14649 394 aa3.35□□□□□ -1.87
CCDC39-203ENST00000473854 HOXA3O43365 443 aaPredicted RBP3.35□□□□□ -1.87
CCDC39-203ENST00000473854 DNAJC6O75061 913 aa3.35□□□□□ -1.87
CCDC39-203ENST00000473854 DDX6P26196 483 aaKnown RBP eCLIP3.35□□□□□ -1.87
CCDC39-203ENST00000473854 PTH2RP49190 550 aa3.35□□□□□ -1.87
CCDC39-203ENST00000473854 FNTBP49356 437 aa3.35□□□□□ -1.87
CCDC39-203ENST00000473854 SUMO1P63165 101 aaKnown RBP3.35□□□□□ -1.87
CCDC39-203ENST00000473854 TMEM132BQ14DG7 1078 aa3.35□□□□□ -1.87
CCDC39-203ENST00000473854 LILRA3Q8N6C8 439 aaPredicted RBP3.35□□□□□ -1.87
CCDC39-203ENST00000473854 RPGRQ92834 1020 aaKnown RBP3.35□□□□□ -1.87
CCDC39-203ENST00000473854 ERCC4Q92889 916 aaPredicted RBP3.35□□□□□ -1.87
CCDC39-203ENST00000473854 ACSS2Q9NR19 701 aa3.35□□□□□ -1.87
CCDC39-203ENST00000473854 SEMA4GQ9NTN9 838 aa3.35□□□□□ -1.87
CCDC39-203ENST00000473854 DKK2Q9UBU2 259 aa3.35□□□□□ -1.87
CCDC39-203ENST00000473854 ZNF70Q9UC06 446 aaPredicted RBP3.35□□□□□ -1.87
CCDC39-203ENST00000473854 SLC12A8A0AV02 714 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 PRLP01236 227 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 APOBEC3AP31941 199 aaPredicted RBP3.34□□□□□ -1.87
CCDC39-203ENST00000473854 BCAR1P56945 870 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 GABREP78334 506 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 FAM189BP81408 668 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 SRSF4Q08170 494 aaKnown RBP3.34□□□□□ -1.87
CCDC39-203ENST00000473854 CATSPEREQ5SY80 951 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 SLFN12LQ6IEE8 588 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 CC2D1AQ6P1N0 951 aaPredicted RBP3.34□□□□□ -1.87
CCDC39-203ENST00000473854 RTN4RL1Q86UN2 441 aaPredicted RBP3.34□□□□□ -1.87
CCDC39-203ENST00000473854 WASF1Q92558 559 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 UIMC1Q96RL1 719 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 OSBPL6Q9BZF3 934 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 HAPLN2Q9GZV7 340 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 MAGEL2Q9UJ55 1249 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 CHST2Q9Y4C5 530 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 MAST3O60307 1309 aa3.34□□□□□ -1.87
CCDC39-203ENST00000473854 FSBPO95073 299 aa3.33□□□□□ -1.88
CCDC39-203ENST00000473854 ANTXR2P58335 489 aa3.33□□□□□ -1.88
CCDC39-203ENST00000473854 HDLBPQ00341 1268 aaKnown RBP3.33□□□□□ -1.88
CCDC39-203ENST00000473854 SLC6A3Q01959 620 aa3.33□□□□□ -1.88
CCDC39-203ENST00000473854 DDR2Q16832 855 aa3.33□□□□□ -1.88
CCDC39-203ENST00000473854 PIK3R6Q5UE93 754 aa3.33□□□□□ -1.88
CCDC39-203ENST00000473854 PTF1AQ7RTS3 328 aa3.33□□□□□ -1.88
CCDC39-203ENST00000473854 CISD2Q8N5K1 135 aaKnown RBP3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms