RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 VBP1P61758 197 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 TP53BP2Q13625 1128 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 USH1GQ495M9 461 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 STAMQ92783 540 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 ASPSCR1Q9BZE9 553 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 POLD4Q9HCU8 107 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 A1CFQ9NQ94 594 aaKnown RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 PIH1D3Q9NQM4 214 aaKnown RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 PCDHA7Q9UN72 937 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 PLCL2Q9UPR0 1127 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 THRAP3Q9Y2W1 955 aaKnown RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 A0A1W2PQ72 361 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 MTSS1O43312 755 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 NDUFB5O43674 189 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 MFAP3LO75121 409 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 AP1S2P56377 157 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 PTK2Q05397 1052 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 MESDQ14696 234 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 CDC37Q16543 378 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 SMU1Q2TAY7 513 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 C10orf76Q5T2E6 689 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 TAB3Q8N5C8 712 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 ARHGEF1Q92888 912 aaKnown RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 TTC25Q96NG3 672 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 TEX12Q9BXU0 123 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 BLZF1Q9H2G9 400 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 RSL24D1Q9UHA3 163 aaKnown RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 RTL9Q8NET4 1388 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 PSMD14O00487 310 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 GNPATO15228 680 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 CAV1Q03135 178 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 SLC34A1Q06495 639 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 SLC12A1Q13621 1099 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 ZNF394Q53GI3 561 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 ARHGAP17Q68EM7 881 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 OTUD7BQ6GQQ9 843 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 ASB12Q8WXK4 309 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 TRNAU1APQ9NX07 287 aaKnown RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 RNF123Q5XPI4 1314 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 F8W810 466 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 GNA11P29992 359 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 USP46P62068 366 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 CYP27A1Q02318 531 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 KBTBD2Q8IY47 623 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 RSPH1Q8WYR4 309 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 SIRT1Q96EB6 747 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 COX4I2Q96KJ9 171 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 TUBGCP2Q9BSJ2 902 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 CACNA2D2Q9NY47 1150 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 KPNA7A9QM74 516 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 ANGPT2O15123 496 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 ENO2P09104 434 aaPredicted RBP9.52□□□□□ -0.88
COL6A3-210ENST00000473258 ALOX12P18054 663 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 GTF2H1P32780 548 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 TTKP33981 857 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 RHAGQ02094 409 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 EPS8Q12929 822 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 CCDC81Q6ZN84 652 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 HDAC2Q92769 488 aaKnown RBP9.52□□□□□ -0.88
COL6A3-210ENST00000473258 BORCS5Q969J3 196 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 MNTQ99583 582 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 TM6SF1Q9BZW5 370 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 DNAJC12Q9UKB3 198 aa9.52□□□□□ -0.88
COL6A3-210ENST00000473258 MTO1Q9Y2Z2 717 aaKnown RBP9.52□□□□□ -0.88
COL6A3-210ENST00000473258 CDHR2Q9BYE9 1310 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 GRID2IPA4D2P6 1211 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 PRPF6O94906 941 aaKnown RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 DEXIO95424 95 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 ASS1P00966 412 aaKnown RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 TNFAIP2Q03169 654 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 HERC4Q5GLZ8 1057 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 NEK8Q86SG6 692 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 ZSCAN29Q8IWY8 852 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 RHOT2Q8IXI1 618 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 FAM178BQ8IXR5 827 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 PHC3Q8NDX5 983 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 STK32AQ8WU08 396 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 MAGED4Q96JG8 741 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 WDR24Q96S15 920 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 TIMMDC1Q9NPL8 285 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 CLIC5Q9NZA1 410 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 DIS3Q9Y2L1 958 aaKnown RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 GNAT3A8MTJ3 354 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 TOP3BO95985 862 aaKnown RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 CALB2P22676 271 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 TTC38Q5R3I4 469 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 C16orf89Q6UX73 402 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 NCCRP1Q6ZVX7 275 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 MEIS3Q99687 375 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 TRPV5Q9NQA5 729 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 GINM1Q9NU53 330 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 SLC52A1Q9NWF4 448 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 DNAJC5BQ9UF47 199 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 SMG5Q9UPR3 1016 aaKnown RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 CCDC141Q6ZP82 1450 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 POTECB2RU33 542 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 B3GALNT1O75752 331 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 FGGP02679 453 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 SLC9A1P19634 815 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms