RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 KRT79Q5XKE5 535 aa17.43■□□□□ 0.38
HDAC6-218ENST00000470942 PADI6Q6TGC4 694 aa17.43■□□□□ 0.38
HDAC6-218ENST00000470942 ZNF598Q86UK7 904 aaKnown RBP17.43■□□□□ 0.38
HDAC6-218ENST00000470942 IGSF22Q8N9C0 903 aa17.43■□□□□ 0.38
HDAC6-218ENST00000470942 MCPH1Q8NEM0 835 aa17.43■□□□□ 0.38
HDAC6-218ENST00000470942 ASB2Q96Q27 587 aa17.43■□□□□ 0.38
HDAC6-218ENST00000470942 COL25A1Q9BXS0 654 aaPredicted RBP17.43■□□□□ 0.38
HDAC6-218ENST00000470942 GPRC5CQ9NQ84 441 aa17.43■□□□□ 0.38
HDAC6-218ENST00000470942 FAM105AQ9NUU6 356 aa17.43■□□□□ 0.38
HDAC6-218ENST00000470942 DDX19AQ9NUU7 478 aaKnown RBP17.43■□□□□ 0.38
HDAC6-218ENST00000470942 TCF20Q9UGU0 1960 aaKnown RBP17.42■□□□□ 0.38
HDAC6-218ENST00000470942 PP2D1A8MPX8 630 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 ITGB1P05556 798 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 ATF7P17544 494 aaPredicted RBP17.42■□□□□ 0.38
HDAC6-218ENST00000470942 PDCP20941 246 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 RAB27AP51159 221 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 ATP2C1P98194 919 aaPredicted RBP17.42■□□□□ 0.38
HDAC6-218ENST00000470942 NCBP1Q09161 790 aaKnown RBP17.42■□□□□ 0.38
HDAC6-218ENST00000470942 AAK1Q2M2I8 961 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 TCEAL5Q5H9L2 206 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 CLLU1OSQ5K130 101 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 LRRC43Q8N309 656 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 COLGALT1Q8NBJ5 622 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 SPPL3Q8TCT6 385 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 SYMPKQ92797 1274 aaKnown RBP17.42■□□□□ 0.38
HDAC6-218ENST00000470942 LPPQ93052 612 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 TRAIPQ9BWF2 469 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 NSUN3Q9H649 340 aaKnown RBP17.42■□□□□ 0.38
HDAC6-218ENST00000470942 CWH43Q9H720 699 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 FOXD4L1Q9NU39 408 aa17.42■□□□□ 0.38
HDAC6-218ENST00000470942 CUL9Q8IWT3 2517 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 LRRIQ4A6NIV6 560 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 K7ELQ4 463 aaPredicted RBP17.41■□□□□ 0.38
HDAC6-218ENST00000470942 LAG3P18627 525 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 CDC25AP30304 524 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 POU5F1BQ06416 359 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 ZRSR1Q15695 479 aaKnown RBP17.41■□□□□ 0.38
HDAC6-218ENST00000470942 LRRC55Q6ZSA7 311 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 THNSL1Q8IYQ7 743 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 POF1BQ8WVV4 589 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 PGBD4Q96DM1 585 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 BHMT2Q9H2M3 363 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 PCDHB2Q9Y5E7 798 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 BRWD1Q9NSI6 2320 aa17.41■□□□□ 0.38
HDAC6-218ENST00000470942 VWA3AA6NCI4 1184 aa17.4■□□□□ 0.38
HDAC6-218ENST00000470942 ZNF623O75123 536 aa17.4■□□□□ 0.38
HDAC6-218ENST00000470942 CYP11B2P19099 503 aa17.4■□□□□ 0.38
HDAC6-218ENST00000470942 AXLP30530 894 aa17.4■□□□□ 0.38
HDAC6-218ENST00000470942 HOXA11P31270 313 aaPredicted RBP17.4■□□□□ 0.38
HDAC6-218ENST00000470942 MBTD1Q05BQ5 628 aa17.4■□□□□ 0.38
HDAC6-218ENST00000470942 PCBP1Q15365 356 aaKnown RBP eCLIP17.4■□□□□ 0.38
HDAC6-218ENST00000470942 CSPP1Q1MSJ5 1256 aa17.4■□□□□ 0.38
HDAC6-218ENST00000470942 EP400NLQ6ZTU2 488 aa17.4■□□□□ 0.38
HDAC6-218ENST00000470942 BRAPQ7Z569 592 aa17.4■□□□□ 0.38
HDAC6-218ENST00000470942 IFNLR1Q8IU57 520 aaPredicted RBP17.4■□□□□ 0.38
HDAC6-218ENST00000470942 CPB2Q96IY4 423 aa17.4■□□□□ 0.38
HDAC6-218ENST00000470942 MRPL9Q9BYD2 267 aaKnown RBP17.4■□□□□ 0.38
HDAC6-218ENST00000470942 DNM3Q9UQ16 869 aa17.4■□□□□ 0.38
HDAC6-218ENST00000470942 E9PMD0 336 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 TSPAN1O60635 241 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 FGF18O76093 207 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 DNAJB1P25685 340 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 KCNQ1P51787 676 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 CAMK1Q14012 370 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 ARL6IP4Q66PJ3 421 aaKnown RBP17.39■□□□□ 0.37
HDAC6-218ENST00000470942 NOTUMQ6P988 496 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 KCNT2Q6UVM3 1135 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 GLB1LQ6UWU2 654 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 ZBTB8OSQ8IWT0 167 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 INTS4Q96HW7 963 aaKnown RBP17.39■□□□□ 0.37
HDAC6-218ENST00000470942 ZNF558Q96NG5 402 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 UBE2ZQ9H832 354 aaPredicted RBP17.39■□□□□ 0.37
HDAC6-218ENST00000470942 POLD4Q9HCU8 107 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 INPP5FQ9Y2H2 1132 aa17.39■□□□□ 0.37
HDAC6-218ENST00000470942 SPTBN5Q9NRC6 3674 aaKnown RBP17.39■□□□□ 0.37
HDAC6-218ENST00000470942 MEIS3P2A8K0S8 358 aa17.38■□□□□ 0.37
HDAC6-218ENST00000470942 EYA4O95677 639 aa17.38■□□□□ 0.37
HDAC6-218ENST00000470942 SYT1P21579 422 aa17.38■□□□□ 0.37
HDAC6-218ENST00000470942 UBXN11Q5T124 520 aa17.38■□□□□ 0.37
HDAC6-218ENST00000470942 MRPL10Q7Z7H8 261 aaKnown RBP17.38■□□□□ 0.37
HDAC6-218ENST00000470942 MICAL1Q8TDZ2 1067 aa17.38■□□□□ 0.37
HDAC6-218ENST00000470942 MMTAG2Q9BU76 263 aaKnown RBP17.38■□□□□ 0.37
HDAC6-218ENST00000470942 NFKBIZQ9BYH8 718 aa17.38■□□□□ 0.37
HDAC6-218ENST00000470942 IGFLR1Q9H665 355 aa17.38■□□□□ 0.37
HDAC6-218ENST00000470942 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.37■□□□□ 0.37
HDAC6-218ENST00000470942 OFD1O75665 1012 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 BMP15O95972 392 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 ITGA4P13612 1032 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 ARF4P18085 180 aaPredicted RBP17.37■□□□□ 0.37
HDAC6-218ENST00000470942 KCNA5P22460 613 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 IRS1P35568 1242 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 PBX3P40426 434 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 UBE3AQ05086 875 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 RNASELQ05823 741 aaKnown RBP17.37■□□□□ 0.37
HDAC6-218ENST00000470942 PPP2R5AQ15172 486 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 AMHR2Q16671 573 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 NOMO2Q5JPE7 1267 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 CNNM3Q8NE01 707 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 DEPTORQ8TB45 409 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 BSNDQ8WZ55 320 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms