RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 PDXDC2PQ6P474 469 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 ZNF852Q6ZMS4 543 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 TPRG1Q6ZUI0 275 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 SESTD1Q86VW0 696 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 WDR5BQ86VZ2 330 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 MARCH9Q86YJ5 346 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 ZNF594Q96JF6 807 aaPredicted RBP6.13□□□□□ -1.43
HMGB1-207ENST00000468384 ZC3H10Q96K80 434 aaKnown RBP6.13□□□□□ -1.43
HMGB1-207ENST00000468384 PLA2G12BQ9BX93 195 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 NGRNQ9NPE2 291 aaKnown RBP6.13□□□□□ -1.43
HMGB1-207ENST00000468384 CNNM1Q9NRU3 951 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 HYPKQ9NX55 129 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 MRPS17Q9Y2R5 130 aaKnown RBP6.13□□□□□ -1.43
HMGB1-207ENST00000468384 NUMBLQ9Y6R0 609 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 TGP01266 2768 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 KIF26AQ9ULI4 1882 aaPredicted RBP6.13□□□□□ -1.43
HMGB1-207ENST00000468384 MED13Q9UHV7 2174 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 BCLAF3A2AJT9 711 aaKnown RBP6.12□□□□□ -1.43
HMGB1-207ENST00000468384 KPNA6O60684 536 aa6.12□□□□□ -1.43
HMGB1-207ENST00000468384 BTDP43251 543 aa6.12□□□□□ -1.43
HMGB1-207ENST00000468384 ALDH7A1P49419 539 aaKnown RBP6.12□□□□□ -1.43
HMGB1-207ENST00000468384 CLDN10P78369 228 aa6.12□□□□□ -1.43
HMGB1-207ENST00000468384 IFIT5Q13325 482 aaKnown RBP6.12□□□□□ -1.43
HMGB1-207ENST00000468384 TSGA10IPQ3SY00 556 aa6.12□□□□□ -1.43
HMGB1-207ENST00000468384 FNDC1Q4ZHG4 1894 aaPredicted RBP6.12□□□□□ -1.43
HMGB1-207ENST00000468384 PAN2Q504Q3 1202 aaKnown RBP6.12□□□□□ -1.43
HMGB1-207ENST00000468384 TAPT1Q6NXT6 567 aa6.12□□□□□ -1.43
HMGB1-207ENST00000468384 LDHAL6AQ6ZMR3 332 aa6.12□□□□□ -1.43
HMGB1-207ENST00000468384 TMPRSS7Q7RTY8 843 aa6.12□□□□□ -1.43
HMGB1-207ENST00000468384 RTTNQ86VV8 2226 aa6.12□□□□□ -1.43
HMGB1-207ENST00000468384 ST13P5Q8NFI4 369 aaPredicted RBP6.12□□□□□ -1.43
HMGB1-207ENST00000468384 OSBPL7Q9BZF2 842 aa6.12□□□□□ -1.43
HMGB1-207ENST00000468384 PCDHB12Q9Y5F1 795 aa6.12□□□□□ -1.43
HMGB1-207ENST00000468384 CCDC194A0A1B0GVG4 234 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 MEFVO15553 781 aaPredicted RBP6.11□□□□□ -1.43
HMGB1-207ENST00000468384 LZTS3O60299 673 aaPredicted RBP6.11□□□□□ -1.43
HMGB1-207ENST00000468384 PAPSS2O95340 614 aaPredicted RBP6.11□□□□□ -1.43
HMGB1-207ENST00000468384 DDX58O95786 925 aaKnown RBP6.11□□□□□ -1.43
HMGB1-207ENST00000468384 DGKGP49619 791 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 IRX4P78413 519 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 HNRNPDQ14103 355 aaKnown RBP6.11□□□□□ -1.43
HMGB1-207ENST00000468384 GCKRQ14397 625 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 C4orf48Q5BLP8 95 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 TOGARAM2Q6ZUX3 1019 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 Q6ZVU0 165 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 UBE3BQ7Z3V4 1068 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 METTL16Q86W50 562 aaKnown RBP6.11□□□□□ -1.43
HMGB1-207ENST00000468384 GPKOWQ92917 476 aaPredicted RBP eCLIP6.11□□□□□ -1.43
HMGB1-207ENST00000468384 KIF2CQ99661 725 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 RPP25Q9BUL9 199 aaKnown RBP6.11□□□□□ -1.43
HMGB1-207ENST00000468384 METTL22Q9BUU2 404 aaPredicted RBP6.11□□□□□ -1.43
HMGB1-207ENST00000468384 USP26Q9BXU7 913 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 CSRNP2Q9H175 543 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 EVA1BQ9NVM1 165 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 KIAA1522Q9P206 1035 aaPredicted RBP6.11□□□□□ -1.43
HMGB1-207ENST00000468384 ZNF214Q9UL59 606 aaPredicted RBP6.11□□□□□ -1.43
HMGB1-207ENST00000468384 LZTS1Q9Y250 596 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 KIAA1671Q9BY89 1806 aa6.11□□□□□ -1.43
HMGB1-207ENST00000468384 ARHGEF17Q96PE2 2063 aaPredicted RBP6.1□□□□□ -1.43
HMGB1-207ENST00000468384 H7C1W4 665 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 DKK1O94907 266 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 CCDC192P0DO97 292 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 EPCAMP16422 314 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 HOXA6P31267 233 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 THPOP40225 353 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 MAPK8P45983 427 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 MCCD1P59942 119 aaPredicted RBP6.1□□□□□ -1.43
HMGB1-207ENST00000468384 PFKPQ01813 784 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 RAB3GAP1Q15042 981 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 TRIP6Q15654 476 aaKnown RBP6.1□□□□□ -1.43
HMGB1-207ENST00000468384 SWI5Q1ZZU3 235 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 MAP7D1Q3KQU3 841 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 PLK5Q496M5 336 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 DUSP28Q4G0W2 176 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 BRDTQ58F21 947 aaPredicted RBP6.1□□□□□ -1.43
HMGB1-207ENST00000468384 C1QL3Q5VWW1 255 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 RIPOR1Q6ZS17 1223 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 CABP7Q86V35 215 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 THNSL1Q8IYQ7 743 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 ARMC2Q8NEN0 867 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 ZNF592Q92610 1267 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 APBB2Q92870 758 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 KRTAP9-3Q9BYQ3 159 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 DKK3Q9UBP4 350 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 GTF2IRD1Q9UHL9 959 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 PUF60Q9UHX1 559 aaKnown RBP6.1□□□□□ -1.43
HMGB1-207ENST00000468384 NDRG2Q9UN36 371 aaKnown RBP6.1□□□□□ -1.43
HMGB1-207ENST00000468384 ADAMTS5Q9UNA0 930 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 KIAA1024Q9UPX6 916 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 PCSK5Q92824 1860 aa6.1□□□□□ -1.43
HMGB1-207ENST00000468384 WIPF3A6NGB9 483 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 C2orf71A6NGG8 1288 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 PATE3B3GLJ2 98 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 IGKV5-2P06315 115 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 LAMP2P13473 410 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 HOXC13P31276 330 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 RELBQ01201 579 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 ARHGAP40Q5TG30 622 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 PDXDC1Q6P996 788 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 KIAA1211Q6ZU35 1233 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms