RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 CCSER1Q9C0I3 900 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 ZHX3Q9H4I2 956 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 RGS18Q9NS28 235 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 BLOC1S4Q9NUP1 217 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 PCDHA7Q9UN72 937 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 INSL6Q9Y581 213 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 ATP6V1DQ9Y5K8 247 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 CUTAO60888 179 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 PPP6R2O75170 966 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 STAG3L1P0CL83 205 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 STAT6P42226 847 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 SLC12A3P55017 1021 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 PEX3P56589 373 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 KRT85P78386 507 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 MBTD1Q05BQ5 628 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 NCBP1Q09161 790 aaKnown RBP13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 DSC3Q14574 896 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 GRIN2CQ14957 1233 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 ATL3Q6DD88 541 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 CDR2LQ86X02 465 aaPredicted RBP13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 NPAS4Q8IUM7 802 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 SPATA32Q96LK8 384 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 DRC1Q96MC2 740 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 C1orf112Q9NSG2 853 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 DACT1Q9NYF0 836 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 USP20Q9Y2K6 914 aa13.31□□□□□ -0.28
SHROOM3-202ENST00000466541 CHD7Q9P2D1 2997 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 A0A087X0B3 334 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 TBKBP1A7MCY6 615 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 C9IYK1 514 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 RFXAPO00287 272 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 B4GALT5O43286 388 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 SLC26A4O43511 780 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 FGFR1P11362 822 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 DDIT3P35638 169 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 NUCB2P80303 420 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 TAP1Q03518 808 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 BTG3Q14201 252 aaPredicted RBP13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 PPP2R5AQ15172 486 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 ARSHQ5FYA8 562 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 CCDC73Q6ZRK6 1079 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 DYMQ7RTS9 669 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 LEO1Q8WVC0 666 aaPredicted RBP13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 LARP4BQ92615 738 aaKnown RBP13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 LPPQ93052 612 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 PRDM12Q9H4Q4 367 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 GDPD2Q9HCC8 539 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 AGPAT5Q9NUQ2 364 aa13.3□□□□□ -0.28
SHROOM3-202ENST00000466541 SLC16A4O15374 487 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 TSPAN1O60635 241 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 FAM13AO94988 1023 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 PRKCBP05771 671 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 NAMPTP43490 491 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 NPTX2P47972 431 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 DMP1Q13316 513 aaPredicted RBP13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 AXDND1Q5T1B0 1012 aaPredicted RBP13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 SPOUT1Q5T280 376 aaKnown RBP13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 GPR153Q6NV75 609 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 SHC4Q6S5L8 630 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 SV2BQ7L1I2 683 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 ECHDC2Q86YB7 292 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 FIBCD1Q8N539 461 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 MYLIPQ8WY64 445 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 STAMQ92783 540 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 DHX58Q96C10 678 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 REEP2Q9BRK0 252 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 APOL6Q9BWW8 343 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 C2orf40Q9H1Z8 148 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 KMT5AQ9NQR1 393 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 CHST12Q9NRB3 414 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 MTMR10Q9NXD2 777 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 RCOR1Q9UKL0 485 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 FNDC1Q4ZHG4 1894 aaPredicted RBP13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 NLRC5Q86WI3 1866 aa13.29□□□□□ -0.28
SHROOM3-202ENST00000466541 LINC01553A4QN01 128 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 TBCAO75347 108 aaKnown RBP13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 DGKIO75912 1065 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 ARF4P18085 180 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 IGFBP4P22692 258 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 GUCY2CP25092 1073 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 HOXA11P31270 313 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 FAM189BP81408 668 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 HTRA4P83105 476 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 MAPK7Q13164 816 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 PRPF4BQ13523 1007 aaKnown RBP13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 MAPK6Q16659 721 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 ABI1Q8IZP0 508 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 DAW1Q8N136 415 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 KCTD17Q8N5Z5 321 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 MYCT1Q8N699 235 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 HELQQ8TDG4 1101 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 CDX2Q99626 313 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 C17orf80Q9BSJ5 609 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 TIPINQ9BVW5 301 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 EIF2AQ9BY44 585 aaKnown RBP13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 TRIM6Q9C030 488 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 FAM105AQ9NUU6 356 aa13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 RNF216Q9NWF9 866 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-202ENST00000466541 TMEM161AQ9NX61 479 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms