RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 FAM187BQ17R55 369 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 RINT1Q6NUQ1 792 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 PPP4R3CPQ6ZMV5 832 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 KCNK18Q7Z418 384 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 RTN4RL1Q86UN2 441 aaPredicted RBP13.13□□□□□ -0.31
VPS52-213ENST00000461743 SPRYD3Q8NCJ5 442 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 ZNF689Q96CS4 500 aaPredicted RBP13.13□□□□□ -0.31
VPS52-213ENST00000461743 ZNF668Q96K58 619 aaPredicted RBP13.13□□□□□ -0.31
VPS52-213ENST00000461743 CSRNP2Q9H175 543 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 PRMT7Q9NVM4 692 aaPredicted RBP13.13□□□□□ -0.31
VPS52-213ENST00000461743 LRFN2Q9ULH4 789 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 PIN4Q9Y237 131 aaKnown RBP13.13□□□□□ -0.31
VPS52-213ENST00000461743 A0A0U1RQF3 1178 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 LINC01553A4QN01 128 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 LRRIQ4A6NIV6 560 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 CUTAO60888 179 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 DGKIO75912 1065 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 UPP2O95045 317 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 EOMESO95936 686 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 PLA2G4BP0C869 781 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 MYOGP15173 224 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 SCP2P22307 547 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 EFNA5P52803 228 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 ERVK-21P61565 698 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 TAP1Q03518 808 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 DMP1Q13316 513 aaPredicted RBP13.12□□□□□ -0.31
VPS52-213ENST00000461743 ZRSR1Q15695 479 aaKnown RBP13.12□□□□□ -0.31
VPS52-213ENST00000461743 TWF2Q6IBS0 349 aaKnown RBP13.12□□□□□ -0.31
VPS52-213ENST00000461743 NOTUMQ6P988 496 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 C1orf186Q6ZWK4 172 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 Q7L0L9 218 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 TMCO2Q7Z6W1 182 aaPredicted RBP13.12□□□□□ -0.31
VPS52-213ENST00000461743 LARP4BQ92615 738 aaKnown RBP13.12□□□□□ -0.31
VPS52-213ENST00000461743 RAD54LQ92698 747 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 SYMPKQ92797 1274 aaKnown RBP13.12□□□□□ -0.31
VPS52-213ENST00000461743 GUCD1Q96NT3 240 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 TGS1Q96RS0 853 aaKnown RBP13.12□□□□□ -0.31
VPS52-213ENST00000461743 MINDY3Q9H8M7 445 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 GPRC5CQ9NQ84 441 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 ODF2LQ9ULJ1 636 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 PCDHB7Q9Y5E2 793 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 CNTNAP2Q9UHC6 1331 aa13.12□□□□□ -0.31
VPS52-213ENST00000461743 A0A087WWV3 80 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 LCHNA4D1U4 455 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 INO80B-WBP1J3KQ70 363 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 TSPAN1O60635 241 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 ZNF623O75123 536 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 KRT85P78386 507 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 KARSQ15046 597 aaKnown RBP13.11□□□□□ -0.31
VPS52-213ENST00000461743 FAM117BQ6P1L5 589 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 CCDC73Q6ZRK6 1079 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 ECHDC2Q86YB7 292 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 FIBCD1Q8N539 461 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 CNNM3Q8NE01 707 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 KCNN1Q92952 543 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 CLP1Q92989 425 aaKnown RBP13.11□□□□□ -0.31
VPS52-213ENST00000461743 GAS2L1Q99501 681 aaPredicted RBP13.11□□□□□ -0.31
VPS52-213ENST00000461743 RUSC1Q9BVN2 902 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 BLOC1S4Q9NUP1 217 aa13.11□□□□□ -0.31
VPS52-213ENST00000461743 PRRC2BQ5JSZ5 2229 aaKnown RBP13.11□□□□□ -0.31
VPS52-213ENST00000461743 EYSQ5T1H1 3165 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 CARNS1A5YM72 827 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 H0YCG3 227 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 HIP1RO75146 1068 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 CSDE1O75534 798 aaKnown RBP13.1□□□□□ -0.31
VPS52-213ENST00000461743 FGFR4P22455 802 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 ABCD1P33897 745 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 NUCB2P80303 420 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 MAPK7Q13164 816 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 BTG3Q14201 252 aaPredicted RBP13.1□□□□□ -0.31
VPS52-213ENST00000461743 MAPK6Q16659 721 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 AMHR2Q16671 573 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 FOXD4L5Q5VV16 416 aaPredicted RBP13.1□□□□□ -0.31
VPS52-213ENST00000461743 ZNF598Q86UK7 904 aaKnown RBP13.1□□□□□ -0.31
VPS52-213ENST00000461743 DAW1Q8N136 415 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 DEPTORQ8TB45 409 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 SPIRE2Q8WWL2 714 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 FOXD4L4Q8WXT5 416 aaPredicted RBP13.1□□□□□ -0.31
VPS52-213ENST00000461743 BSNDQ8WZ55 320 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 PGBD4Q96DM1 585 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 EPSTI1Q96J88 318 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 CLIC6Q96NY7 704 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 PYM1Q9BRP8 204 aaKnown RBP13.1□□□□□ -0.31
VPS52-213ENST00000461743 MRPL9Q9BYD2 267 aaKnown RBP13.1□□□□□ -0.31
VPS52-213ENST00000461743 TMEM117Q9H0C3 514 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 CCDC113Q9H0I3 377 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 FZD8Q9H461 694 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 CUEDC2Q9H467 287 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 FAM105AQ9NUU6 356 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 LARSQ9P2J5 1176 aaKnown RBP13.1□□□□□ -0.31
VPS52-213ENST00000461743 STXBP5LQ9Y2K9 1186 aa13.1□□□□□ -0.31
VPS52-213ENST00000461743 REV3LO60673 3130 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 C5orf67F2Z3F1 127 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 N4BP3O15049 544 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 SSBP05455 408 aaKnown RBP eCLIP13.09□□□□□ -0.31
VPS52-213ENST00000461743 RB1P06400 928 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 ANK1P16157 1881 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 HOXA11P31270 313 aaPredicted RBP13.09□□□□□ -0.31
VPS52-213ENST00000461743 ZNF131P52739 623 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 GRIN2CQ14957 1233 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms