RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ZNF131P52739 623 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 RBBP5Q15291 538 aaKnown RBP12.61□□□□□ -0.39
CPSF3-202ENST00000460593 C10orf76Q5T2E6 689 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 SRRM1Q8IYB3 904 aaKnown RBP12.61□□□□□ -0.39
CPSF3-202ENST00000460593 TEKT4Q8WW24 435 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 CTNNBL1Q8WYA6 563 aaPredicted RBP12.61□□□□□ -0.39
CPSF3-202ENST00000460593 GPR101Q96P66 508 aaPredicted RBP12.61□□□□□ -0.39
CPSF3-202ENST00000460593 NENFQ9UMX5 172 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 LRP5O75197 1615 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 NUP98P52948 1817 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 PEX11AO75192 247 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 CBX6O95503 412 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 BRAFP15056 766 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 VCAM1P19320 739 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 POLD1P28340 1107 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 EPHB2P29323 1055 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 FOXN2P32314 431 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 PPATQ06203 517 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 PPP1R15BQ5SWA1 713 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 VPS36Q86VN1 386 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 IFT74Q96LB3 600 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 CCDC134Q9H6E4 229 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 RXFP1Q9HBX9 757 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 METTL5Q9NRN9 209 aaKnown RBP12.61□□□□□ -0.39
CPSF3-202ENST00000460593 ALG6Q9Y672 507 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 ADAMTSL3P82987 1691 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 MED24O75448 989 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 STX2P32856 288 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 PAPOLAP51003 745 aaKnown RBP12.61□□□□□ -0.39
CPSF3-202ENST00000460593 MESDQ14696 234 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 KYNUQ16719 465 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 SBK1Q52WX2 424 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 TMEM154Q6P9G4 183 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 VSIG1Q86XK7 387 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 ZNF526Q8TF50 670 aaPredicted RBP12.61□□□□□ -0.39
CPSF3-202ENST00000460593 SLC20A1Q8WUM9 679 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 RFFLQ8WZ73 363 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 CEP95Q96GE4 821 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 FAM118BQ9BPY3 351 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 SLCO1B3Q9NPD5 702 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 HOMER3Q9NSC5 361 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 DLGAP2Q9P1A6 1054 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 PCDHA12Q9UN75 941 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 ERVV-1B6SEH8 477 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 SPAG7O75391 227 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 GNA14O95837 355 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 SLC16A2P36021 539 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 ADCY7P51828 1080 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 DRAP1Q14919 205 aaPredicted RBP12.6□□□□□ -0.39
CPSF3-202ENST00000460593 TAOK1Q7L7X3 1001 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 C1orf54Q8WWF1 131 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 MRRFQ96E11 262 aaKnown RBP12.6□□□□□ -0.39
CPSF3-202ENST00000460593 NUDCD1Q96RS6 583 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 RAB34Q9BZG1 259 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 MTRF1LQ9UGC7 380 aaKnown RBP12.6□□□□□ -0.39
CPSF3-202ENST00000460593 C2CD2Q9Y426 696 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 GJB6O95452 261 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 TRIM49P0CI25 452 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 TRIM49CP0CI26 452 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 PYGMP11217 842 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 NEFHP12036 1026 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 GNAZP19086 355 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 PRKCIP41743 596 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 RWDD2BP57060 319 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 JAM2P57087 298 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 FAM13CQ8NE31 585 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 SLC35C1Q96A29 364 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 EYA3Q99504 573 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 ACP6Q9NPH0 428 aa12.6□□□□□ -0.39
CPSF3-202ENST00000460593 BZW2Q9Y6E2 419 aaKnown RBP12.6□□□□□ -0.39
CPSF3-202ENST00000460593 STAT1P42224 750 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 MARSP56192 900 aaKnown RBP12.59□□□□□ -0.39
CPSF3-202ENST00000460593 POLE2P56282 527 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 DNAJC3Q13217 504 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 COG2Q14746 738 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 RDH13Q8NBN7 331 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 SPZ1Q9BXG8 430 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 PPP1R12CQ9BZL4 782 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 KIAA1683Q9H0B3 1180 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 AAASQ9NRG9 546 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 CTTNBP2NLQ9P2B4 639 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 KLHL14Q9P2G3 628 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 PRKAG3Q9UGI9 489 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 RASAL2Q9UJF2 1139 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 PCDHA3Q9Y5H8 950 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 TOGARAM1Q9Y4F4 1720 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 ZNF142P52746 1687 aaPredicted RBP12.59□□□□□ -0.39
CPSF3-202ENST00000460593 FAM187AA6NFU0 413 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 RAD21O60216 631 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 PHF2O75151 1096 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 UNC5CO95185 931 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 DLATP10515 647 aaKnown RBP12.59□□□□□ -0.39
CPSF3-202ENST00000460593 CHRNB2P17787 502 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 IL6STP40189 918 aaPredicted RBP12.59□□□□□ -0.39
CPSF3-202ENST00000460593 KCNQ4P56696 695 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 CYP4A11Q02928 519 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 ARHGAP27Q6ZUM4 889 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 FBF1Q8TES7 1133 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 CKAP2Q8WWK9 683 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 ATG4AQ8WYN0 398 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms