RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 CHST12Q9NRB3 414 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 PRKAG3Q9UGI9 489 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 DBR1Q9UK59 544 aaKnown RBP20.62■□□□□ 0.89
HOXD3-204ENST00000459979 COL4A3BPQ9Y5P4 624 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 STK24Q9Y6E0 443 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 NCK2O43639 380 aa20.61■□□□□ 0.89
HOXD3-204ENST00000459979 PDCP20941 246 aa20.61■□□□□ 0.89
HOXD3-204ENST00000459979 CMTR2Q8IYT2 770 aaKnown RBP20.61■□□□□ 0.89
HOXD3-204ENST00000459979 SNX21Q969T3 373 aa20.61■□□□□ 0.89
HOXD3-204ENST00000459979 TMEM143Q96AN5 459 aa20.61■□□□□ 0.89
HOXD3-204ENST00000459979 ZNF668Q96K58 619 aaPredicted RBP20.61■□□□□ 0.89
HOXD3-204ENST00000459979 MTRQ99707 1265 aa20.61■□□□□ 0.89
HOXD3-204ENST00000459979 PLVAPQ9BX97 442 aa20.61■□□□□ 0.89
HOXD3-204ENST00000459979 RAB34Q9BZG1 259 aa20.61■□□□□ 0.89
HOXD3-204ENST00000459979 IFT122Q9HBG6 1241 aa20.61■□□□□ 0.89
HOXD3-204ENST00000459979 PCDHB7Q9Y5E2 793 aa20.61■□□□□ 0.89
HOXD3-204ENST00000459979 ZSCAN20P17040 1043 aaPredicted RBP20.6■□□□□ 0.89
HOXD3-204ENST00000459979 SFPQP23246 707 aaKnown RBP eCLIP20.6■□□□□ 0.89
HOXD3-204ENST00000459979 ATP2C1P98194 919 aaPredicted RBP20.6■□□□□ 0.89
HOXD3-204ENST00000459979 POU5F1BQ06416 359 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 SMAD2Q15796 467 aaKnown RBP20.6■□□□□ 0.89
HOXD3-204ENST00000459979 HAUS3Q68CZ6 603 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 FERMT3Q86UX7 667 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 KSR1Q8IVT5 923 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 KLHL23Q8NBE8 558 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 SPPL3Q8TCT6 385 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 PIGOQ8TEQ8 1089 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 TRAIPQ9BWF2 469 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 TMEM161AQ9NX61 479 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 LRWD1Q9UFC0 647 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 LRFN2Q9ULH4 789 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 PCDHGC5Q9Y5F6 944 aa20.6■□□□□ 0.89
HOXD3-204ENST00000459979 K7ELQ4 463 aaPredicted RBP20.59■□□□□ 0.89
HOXD3-204ENST00000459979 NDUFV1P49821 464 aa20.59■□□□□ 0.89
HOXD3-204ENST00000459979 LAMTOR4Q0VGL1 99 aa20.59■□□□□ 0.89
HOXD3-204ENST00000459979 ADAM15Q13444 863 aa20.59■□□□□ 0.89
HOXD3-204ENST00000459979 SMAD4Q13485 552 aaKnown RBP20.59■□□□□ 0.89
HOXD3-204ENST00000459979 MXD4Q14582 209 aaPredicted RBP20.59■□□□□ 0.89
HOXD3-204ENST00000459979 DTHD1Q6ZMT9 781 aa20.59■□□□□ 0.89
HOXD3-204ENST00000459979 BRAPQ7Z569 592 aa20.59■□□□□ 0.89
HOXD3-204ENST00000459979 SRGAP1Q7Z6B7 1085 aa20.59■□□□□ 0.89
HOXD3-204ENST00000459979 P2RX5Q93086 422 aa20.59■□□□□ 0.89
HOXD3-204ENST00000459979 NLRP4Q96MN2 994 aa20.59■□□□□ 0.89
HOXD3-204ENST00000459979 ATP6V0A4Q9HBG4 840 aa20.59■□□□□ 0.89
HOXD3-204ENST00000459979 DACT1Q9NYF0 836 aa20.59■□□□□ 0.89
HOXD3-204ENST00000459979 CD207Q9UJ71 328 aa20.59■□□□□ 0.89
HOXD3-204ENST00000459979 A0A0U1RQF3 1178 aa20.58■□□□□ 0.89
HOXD3-204ENST00000459979 ARL2P36404 184 aa20.58■□□□□ 0.89
HOXD3-204ENST00000459979 PCBP1Q15365 356 aaKnown RBP eCLIP20.58■□□□□ 0.89
HOXD3-204ENST00000459979 IL17AQ16552 155 aa20.58■□□□□ 0.89
HOXD3-204ENST00000459979 IFNLR1Q8IU57 520 aaPredicted RBP20.58■□□□□ 0.89
HOXD3-204ENST00000459979 POF1BQ8WVV4 589 aa20.58■□□□□ 0.89
HOXD3-204ENST00000459979 CCDC43Q96MW1 224 aaKnown RBP20.58■□□□□ 0.89
HOXD3-204ENST00000459979 MUTYHQ9UIF7 546 aa20.58■□□□□ 0.89
HOXD3-204ENST00000459979 CSDE1O75534 798 aaKnown RBP20.57■□□□□ 0.88
HOXD3-204ENST00000459979 FGFR4P22455 802 aa20.57■□□□□ 0.88
HOXD3-204ENST00000459979 ARL6IP4Q66PJ3 421 aaKnown RBP20.57■□□□□ 0.88
HOXD3-204ENST00000459979 POTEGQ6S5H5 508 aa20.57■□□□□ 0.88
HOXD3-204ENST00000459979 RBM23Q86U06 439 aaKnown RBP20.57■□□□□ 0.88
HOXD3-204ENST00000459979 ALYREFQ86V81 257 aaKnown RBP20.57■□□□□ 0.88
HOXD3-204ENST00000459979 HCSTQ9UBK5 93 aa20.57■□□□□ 0.88
HOXD3-204ENST00000459979 A0A087WWV3 80 aa20.56■□□□□ 0.88
HOXD3-204ENST00000459979 EOMESO95936 686 aa20.56■□□□□ 0.88
HOXD3-204ENST00000459979 SRGAP2CP0DJJ0 459 aa20.56■□□□□ 0.88
HOXD3-204ENST00000459979 CCT6AP40227 531 aaKnown RBP20.56■□□□□ 0.88
HOXD3-204ENST00000459979 NRIP1P48552 1158 aa20.56■□□□□ 0.88
HOXD3-204ENST00000459979 PTENP60484 403 aa20.56■□□□□ 0.88
HOXD3-204ENST00000459979 ZNF598Q86UK7 904 aaKnown RBP20.56■□□□□ 0.88
HOXD3-204ENST00000459979 ECHDC2Q86YB7 292 aa20.56■□□□□ 0.88
HOXD3-204ENST00000459979 RNF149Q8NC42 400 aa20.56■□□□□ 0.88
HOXD3-204ENST00000459979 MCPH1Q8NEM0 835 aa20.56■□□□□ 0.88
HOXD3-204ENST00000459979 MSLNLQ96KJ4 702 aa20.56■□□□□ 0.88
HOXD3-204ENST00000459979 NFKBIZQ9BYH8 718 aa20.56■□□□□ 0.88
HOXD3-204ENST00000459979 BMP2KQ9NSY1 1161 aaPredicted RBP20.56■□□□□ 0.88
HOXD3-204ENST00000459979 CLEC1BQ9P126 229 aa20.56■□□□□ 0.88
HOXD3-204ENST00000459979 TECTAO75443 2155 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 HOXA2O43364 376 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 SYT1P21579 422 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 PHKA2P46019 1235 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 TFDP1Q14186 410 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 ECM1Q16610 540 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 NAALADL2Q58DX5 795 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 SPOUT1Q5T280 376 aaKnown RBP20.55■□□□□ 0.88
HOXD3-204ENST00000459979 FAM102BQ5T8I3 360 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 HFE2Q6ZVN8 426 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 CATSPER4Q7RTX7 472 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 RNF135Q8IUD6 432 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 KCTD17Q8N5Z5 321 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 POP1Q99575 1024 aaKnown RBP20.55■□□□□ 0.88
HOXD3-204ENST00000459979 MINDY3Q9H8M7 445 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 AGPAT5Q9NUQ2 364 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 BARX2Q9UMQ3 279 aaPredicted RBP20.55■□□□□ 0.88
HOXD3-204ENST00000459979 ZNF318Q5VUA4 2279 aa20.55■□□□□ 0.88
HOXD3-204ENST00000459979 TBKBP1A7MCY6 615 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 ZNF623O75123 536 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 GLP2RO95838 553 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 BMP15O95972 392 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 SKIP12755 728 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 CYP11B2P19099 503 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 GLRA2P23416 452 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms