RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 TMEM117Q9H0C3 514 aa20.71■□□□□ 0.91
USP39-209ENST00000458268 ELAC1Q9H777 363 aaKnown RBP20.71■□□□□ 0.91
USP39-209ENST00000458268 AGPAT5Q9NUQ2 364 aa20.71■□□□□ 0.91
USP39-209ENST00000458268 FAM105AQ9NUU6 356 aa20.71■□□□□ 0.91
USP39-209ENST00000458268 MTMR6Q9Y217 621 aa20.71■□□□□ 0.91
USP39-209ENST00000458268 GRM6O15303 877 aa20.7■□□□□ 0.9
USP39-209ENST00000458268 CYP11B2P19099 503 aa20.7■□□□□ 0.9
USP39-209ENST00000458268 MUTP22033 750 aa20.7■□□□□ 0.9
USP39-209ENST00000458268 MARCKSP29966 332 aaPredicted RBP20.7■□□□□ 0.9
USP39-209ENST00000458268 FAM189BP81408 668 aa20.7■□□□□ 0.9
USP39-209ENST00000458268 NCBP1Q09161 790 aaKnown RBP20.7■□□□□ 0.9
USP39-209ENST00000458268 RAD51AP2Q09MP3 1159 aa20.7■□□□□ 0.9
USP39-209ENST00000458268 DHX8Q14562 1220 aaKnown RBP20.7■□□□□ 0.9
USP39-209ENST00000458268 FOXD4L6Q3SYB3 417 aaPredicted RBP20.7■□□□□ 0.9
USP39-209ENST00000458268 ARL6IP4Q66PJ3 421 aaKnown RBP20.7■□□□□ 0.9
USP39-209ENST00000458268 FOXD4L3Q6VB84 417 aaPredicted RBP20.7■□□□□ 0.9
USP39-209ENST00000458268 EP400NLQ6ZTU2 488 aa20.7■□□□□ 0.9
USP39-209ENST00000458268 KCNK18Q7Z418 384 aa20.7■□□□□ 0.9
USP39-209ENST00000458268 CDR2LQ86X02 465 aaPredicted RBP20.7■□□□□ 0.9
USP39-209ENST00000458268 ZBTB8OSQ8IWT0 167 aa20.7■□□□□ 0.9
USP39-209ENST00000458268 BSNDQ8WZ55 320 aa20.7■□□□□ 0.9
USP39-209ENST00000458268 APOL6Q9BWW8 343 aa20.7■□□□□ 0.9
USP39-209ENST00000458268 TYW1Q9NV66 732 aaKnown RBP20.7■□□□□ 0.9
USP39-209ENST00000458268 PLXNA4Q9HCM2 1894 aa20.7■□□□□ 0.9
USP39-209ENST00000458268 ATG2AQ2TAZ0 1938 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 MYH11P35749 1972 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 A0A0U1RQF3 1178 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 TSPAN1O60635 241 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 EYA4O95677 639 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 BMP15O95972 392 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 ATF7P17544 494 aaPredicted RBP20.69■□□□□ 0.9
USP39-209ENST00000458268 UBA7P41226 1012 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 GRIN1Q05586 938 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 MBTD1Q05BQ5 628 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 CLLU1OSQ5K130 101 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 THNSL1Q8IYQ7 743 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 KLHL23Q8NBE8 558 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 DEPTORQ8TB45 409 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 CLP1Q92989 425 aaKnown RBP20.69■□□□□ 0.9
USP39-209ENST00000458268 IFT74Q96LB3 600 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 KIFC3Q9BVG8 833 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 RNF19AQ9NV58 838 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 THEGQ9P2T0 379 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 PCDHB2Q9Y5E7 798 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 PCDHB12Q9Y5F1 795 aa20.69■□□□□ 0.9
USP39-209ENST00000458268 MEIS3P2A8K0S8 358 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 B4GALT5O43286 388 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 RB1P06400 928 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 LINC00271P0C7V0 271 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 PBX3P40426 434 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 RAB27AP51159 221 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 SPECC1Q5M775 1068 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 FAM43BQ6ZT52 329 aaPredicted RBP20.68■□□□□ 0.9
USP39-209ENST00000458268 LRRC43Q8N309 656 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 MRPL38Q96DV4 380 aaKnown RBP20.68■□□□□ 0.9
USP39-209ENST00000458268 CALML4Q96GE6 196 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 CASD1Q96PB1 797 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 PNMA5Q96PV4 448 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 RUSC1Q9BVN2 902 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 TRIM6Q9C030 488 aaPredicted RBP20.68■□□□□ 0.9
USP39-209ENST00000458268 GBP3Q9H0R5 595 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 AAASQ9NRG9 546 aa20.68■□□□□ 0.9
USP39-209ENST00000458268 EOMESO95936 686 aa20.67■□□□□ 0.9
USP39-209ENST00000458268 SKIP12755 728 aa20.67■□□□□ 0.9
USP39-209ENST00000458268 NOTUMQ6P988 496 aa20.67■□□□□ 0.9
USP39-209ENST00000458268 ZNF598Q86UK7 904 aaKnown RBP20.67■□□□□ 0.9
USP39-209ENST00000458268 COLGALT1Q8NBJ5 622 aa20.67■□□□□ 0.9
USP39-209ENST00000458268 EIF2AQ9BY44 585 aaKnown RBP20.67■□□□□ 0.9
USP39-209ENST00000458268 NT5C3AQ9H0P0 336 aa20.67■□□□□ 0.9
USP39-209ENST00000458268 USP20Q9Y2K6 914 aa20.67■□□□□ 0.9
USP39-209ENST00000458268 CCDC169A6NNP5 214 aa20.66■□□□□ 0.9
USP39-209ENST00000458268 HIP1RO75146 1068 aa20.66■□□□□ 0.9
USP39-209ENST00000458268 NPTXRO95502 500 aa20.66■□□□□ 0.9
USP39-209ENST00000458268 ITGB1P05556 798 aa20.66■□□□□ 0.9
USP39-209ENST00000458268 POU3F3P20264 500 aaPredicted RBP20.66■□□□□ 0.9
USP39-209ENST00000458268 HOXA11P31270 313 aaPredicted RBP20.66■□□□□ 0.9
USP39-209ENST00000458268 CACNB1Q02641 598 aaPredicted RBP20.66■□□□□ 0.9
USP39-209ENST00000458268 RNASELQ05823 741 aaKnown RBP20.66■□□□□ 0.9
USP39-209ENST00000458268 KARSQ15046 597 aaKnown RBP20.66■□□□□ 0.9
USP39-209ENST00000458268 PPP2R5AQ15172 486 aa20.66■□□□□ 0.9
USP39-209ENST00000458268 TIGD5Q53EQ6 642 aa20.66■□□□□ 0.9
USP39-209ENST00000458268 GLB1LQ6UWU2 654 aa20.66■□□□□ 0.9
USP39-209ENST00000458268 PGBD4Q96DM1 585 aa20.66■□□□□ 0.9
USP39-209ENST00000458268 PLVAPQ9BX97 442 aa20.66■□□□□ 0.9
USP39-209ENST00000458268 ZSCAN16Q9H4T2 348 aaPredicted RBP20.66■□□□□ 0.9
USP39-209ENST00000458268 MYO7AQ13402 2215 aa20.66■□□□□ 0.9
USP39-209ENST00000458268 EYSQ5T1H1 3165 aa20.65■□□□□ 0.9
USP39-209ENST00000458268 C5orf67F2Z3F1 127 aa20.65■□□□□ 0.9
USP39-209ENST00000458268 ZC3H11AO75152 810 aaKnown RBP eCLIP20.65■□□□□ 0.9
USP39-209ENST00000458268 PRKCBP05771 671 aa20.65■□□□□ 0.9
USP39-209ENST00000458268 ITGA4P13612 1032 aa20.65■□□□□ 0.9
USP39-209ENST00000458268 ARF4P18085 180 aaPredicted RBP20.65■□□□□ 0.9
USP39-209ENST00000458268 LAG3P18627 525 aa20.65■□□□□ 0.9
USP39-209ENST00000458268 CA8P35219 290 aa20.65■□□□□ 0.9
USP39-209ENST00000458268 PEX3P56589 373 aa20.65■□□□□ 0.9
USP39-209ENST00000458268 TFF2Q03403 129 aa20.65■□□□□ 0.9
USP39-209ENST00000458268 UBXN11Q5T124 520 aa20.65■□□□□ 0.9
USP39-209ENST00000458268 RINT1Q6NUQ1 792 aa20.65■□□□□ 0.9
USP39-209ENST00000458268 LRRC55Q6ZSA7 311 aa20.65■□□□□ 0.9
USP39-209ENST00000458268 MICAL1Q8TDZ2 1067 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms