RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 NUDT8Q8WV74 236 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 BRI3BPQ8WY22 251 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 HTRA1Q92743 480 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 HDAC10Q969S8 669 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 CALML4Q96GE6 196 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 RAX2Q96IS3 184 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 SPAG5Q96R06 1193 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MIPEPQ99797 713 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 HEPHQ9BQS7 1158 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 PRDM5Q9NQX1 630 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 CLDND1Q9NY35 253 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 TUBD1Q9UJT1 453 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 A0A087X0M5 115 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CCDC196A0A1B0GTZ2 297 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 A0A1B0GX30 115 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 PODXLO00592 558 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 AOC2O75106 756 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 EEF1GP26641 437 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 ETV3P41162 512 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 TUBP50607 506 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 MECP2P51608 486 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 TPD52P55327 224 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 DCAF7P61962 342 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SMAD3P84022 425 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 NRG1Q02297 640 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CDC16Q13042 620 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SLMAPQ14BN4 828 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 PTPN14Q15678 1187 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 IQCEQ6IPM2 695 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 PSAPL1Q6NUJ1 521 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 BEND5Q7L4P6 421 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SYT9Q86SS6 491 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 RTN4RL1Q86UN2 441 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 PHF6Q8IWS0 365 aaKnown RBP eCLIP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 LRFN3Q9BTN0 628 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 KLF16Q9BXK1 252 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 FOXQ1Q9C009 403 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 PRDM14Q9GZV8 571 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SOX17Q9H6I2 414 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 ELAC1Q9H777 363 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 PREBQ9HCU5 417 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CBLCQ9ULV8 474 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SOS1Q07889 1333 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 NACADO15069 1562 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SSU72P8A0A1W2PR75 194 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 TADA3O75528 432 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CST3P01034 146 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CYP17A1P05093 508 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CLTBP09497 229 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 ZBTB48P10074 688 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CKMT1AP12532 417 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 LCP1P13796 627 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 RAC2P15153 192 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 STMN1P16949 149 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 DESP17661 470 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CHMP24386 653 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 HOXC13P31276 330 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 AFMP43652 599 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CASP6P55212 293 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 MRPS35P82673 323 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 UBXN1Q04323 297 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 LAPTM5Q13571 262 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 FBXO47Q5MNV8 452 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 FAM26FQ5R3K3 315 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 E4F1Q66K89 784 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 JMJD6Q6NYC1 403 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 ARHGAP36Q6ZRI8 547 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 NEK10Q6ZWH5 1172 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CDH24Q86UP0 819 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 NRSN1Q8IZ57 195 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 TAGAPQ8N103 731 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 KREMEN2Q8NCW0 462 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 TDRD7Q8NHU6 1098 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 TRIM5Q9C035 493 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 ATXN3LQ9H3M9 355 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 TSPY26PQ9H489 355 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SARS2Q9NP81 518 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 KCND1Q9NSA2 647 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 PPARGC1AQ9UBK2 798 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 GIMAP2Q9UG22 337 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SLC6A14Q9UN76 642 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 RABL2BQ9UNT1 228 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 NPHP3-ACAD11A0A0J9YXS1 232 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 BNIP3LO60238 219 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 FOSL1P15407 271 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 PTX3P26022 381 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 TPP2P29144 1249 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 HPDP32754 393 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 ARL3P36405 182 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 AGFG1P52594 562 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 PCBP4P57723 403 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 RAB1AP62820 205 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SPIRE1Q08AE8 756 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 LRP8Q14114 963 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SPIDRQ14159 915 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 WTAPQ15007 396 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 RASA2Q15283 850 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 TMEM266Q2M3C6 531 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CPZQ66K79 652 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 B4GALNT4Q76KP1 1039 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms