RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 PPP1R16BQ96T49 567 aa13.54□□□□□ -0.24
PTPRF-208ENST00000437607 ZNF577Q9BSK1 485 aa13.54□□□□□ -0.24
PTPRF-208ENST00000437607 CSRNP2Q9H175 543 aa13.54□□□□□ -0.24
PTPRF-208ENST00000437607 CWH43Q9H720 699 aa13.54□□□□□ -0.24
PTPRF-208ENST00000437607 ZNF302Q9NR11 478 aa13.54□□□□□ -0.24
PTPRF-208ENST00000437607 USP15Q9Y4E8 981 aaPredicted RBP13.54□□□□□ -0.24
PTPRF-208ENST00000437607 PCDHB7Q9Y5E2 793 aa13.54□□□□□ -0.24
PTPRF-208ENST00000437607 TBKBP1A7MCY6 615 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 BACH1O14867 736 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 FSCN2O14926 492 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 GAS7O60861 476 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 GPR32O75388 356 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 C22orf31O95567 290 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 FXR2P51116 673 aaKnown RBP eCLIP13.53□□□□□ -0.24
PTPRF-208ENST00000437607 UBE3AQ05086 875 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 KCNC3Q14003 757 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 DSC3Q14574 896 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 DUSP6Q16828 381 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 KIZQ2M2Z5 673 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 ZNF484Q5JVG2 852 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 AXDND1Q5T1B0 1012 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-208ENST00000437607 LRCH2Q5VUJ6 765 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 FAM160B1Q5W0V3 765 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 RESP18Q5W5W9 173 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 SWSAP1Q6NVH7 229 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 SLC24A5Q71RS6 500 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 BMP8AQ7Z5Y6 402 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 COLGALT1Q8NBJ5 622 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 PRSS33Q8NF86 280 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 SYAP1Q96A49 352 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-208ENST00000437607 AK8Q96MA6 479 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 MFSD14AQ96MC6 490 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 MTMR9Q96QG7 549 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 PHOX2BQ99453 314 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 OSMRQ99650 979 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 TEKT3Q9BXF9 490 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 TLE6Q9H808 572 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 TTC12Q9H892 705 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-208ENST00000437607 TLR9Q9NR96 1032 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 C1orf112Q9NSG2 853 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 RNF19AQ9NV58 838 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 TYW1Q9NV66 732 aaKnown RBP13.53□□□□□ -0.24
PTPRF-208ENST00000437607 WDR87Q6ZQQ6 2873 aa13.53□□□□□ -0.24
PTPRF-208ENST00000437607 DENND3A2RUS2 1198 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 TMEM221A6NGB7 291 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 M0R296 226 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 MSH4O15457 936 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 FGF18O76093 207 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 VTNP04004 478 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 FGFR1P11362 822 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 PFKFB1P16118 471 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 CMA1P23946 247 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 FAM189BP81408 668 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 ZXDAP98168 799 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 GRIN1Q05586 938 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 KLHL40Q2TBA0 621 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 IER5LQ5T953 404 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 HAUS3Q68CZ6 603 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 PDXDC2PQ6P474 469 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 SHC4Q6S5L8 630 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 LRRC55Q6ZSA7 311 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 TRIM67Q6ZTA4 783 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 LINC01465Q8N7H1 131 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 ERMNQ8TAM6 284 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 SUSD6Q92537 303 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 HAS1Q92839 578 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 PCDHB12Q9Y5F1 795 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 MAFBQ9Y5Q3 323 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-208ENST00000437607 ARID2Q68CP9 1835 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 CACNA1HO95180 2353 aa13.52□□□□□ -0.25
PTPRF-208ENST00000437607 POTEMA6NI47 508 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 IPO5O00410 1097 aaKnown RBP13.51□□□□□ -0.25
PTPRF-208ENST00000437607 GPR182O15218 404 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 TRAK2O60296 914 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 KINO60870 393 aaKnown RBP13.51□□□□□ -0.25
PTPRF-208ENST00000437607 TECP42680 631 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 CRYBB1P53674 252 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-208ENST00000437607 FAM160A1Q05DH4 1040 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 SPECC1Q5M775 1068 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 SPOUT1Q5T280 376 aaKnown RBP13.51□□□□□ -0.25
PTPRF-208ENST00000437607 NCAPH2Q6IBW4 605 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 MIS18BP1Q6P0N0 1132 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 FAM43BQ6ZT52 329 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-208ENST00000437607 GPT2Q8TD30 523 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 BBXQ8WY36 941 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-208ENST00000437607 SLC5A5Q92911 643 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 PYM1Q9BRP8 204 aaKnown RBP13.51□□□□□ -0.25
PTPRF-208ENST00000437607 PHF7Q9BWX1 381 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-208ENST00000437607 GOLPH3LQ9H4A5 285 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 DDX19AQ9NUU7 478 aaKnown RBP13.51□□□□□ -0.25
PTPRF-208ENST00000437607 TMEM161AQ9NX61 479 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 LRWD1Q9UFC0 647 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 PCDHA12Q9UN75 941 aa13.51□□□□□ -0.25
PTPRF-208ENST00000437607 A0A1B0GVL5 298 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 CHMP2AO43633 222 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 LIG1P18858 919 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 UBA7P41226 1012 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 SYKP43405 635 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 CLCN3P51790 818 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 KRT79Q5XKE5 535 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms