RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SYDE2Q5VT97 1194 aa7.72□□□□□ -1.17
CCDC88A-206ENST00000430086 LILRA6Q6PI73 481 aa7.72□□□□□ -1.17
CCDC88A-206ENST00000430086 GLB1LQ6UWU2 654 aa7.72□□□□□ -1.17
CCDC88A-206ENST00000430086 KCNK18Q7Z418 384 aa7.72□□□□□ -1.17
CCDC88A-206ENST00000430086 GLB1L2Q8IW92 636 aa7.72□□□□□ -1.17
CCDC88A-206ENST00000430086 CBARPQ8N350 705 aaPredicted RBP7.72□□□□□ -1.17
CCDC88A-206ENST00000430086 RABGGTAQ92696 567 aa7.72□□□□□ -1.17
CCDC88A-206ENST00000430086 RBM8AQ9Y5S9 174 aaKnown RBP7.72□□□□□ -1.17
CCDC88A-206ENST00000430086 WASHC2CQ9Y4E1 1318 aa7.72□□□□□ -1.17
CCDC88A-206ENST00000430086 TRIM75PA6NK02 468 aa7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 SLC26A4O43511 780 aa7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 FOXD2O60548 495 aaPredicted RBP7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 LY86O95711 162 aa7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 HMGB1P09429 215 aaKnown RBP7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 TCIRG1Q13488 830 aa7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 GAGE13Q4V321 117 aa7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 TGFBRAP1Q8WUH2 860 aa7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 LRRC37BQ96QE4 947 aa7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 UIMC1Q96RL1 719 aa7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 BDH2Q9BUT1 245 aa7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 C14orf93Q9H972 538 aaKnown RBP7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 HOMER2Q9NSB8 354 aa7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 CCM2LQ9NUG4 571 aaPredicted RBP7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 EDARQ9UNE0 448 aa7.71□□□□□ -1.18
CCDC88A-206ENST00000430086 A0A1W2PR48 441 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 GPR42O15529 346 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 MTSS1O43312 755 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 KATNA1O75449 491 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 VSIG10L2P0DP72 767 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 KIR2DL3P43628 341 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 ANAPC15P60006 121 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 ADAM8P78325 824 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 ITKQ08881 620 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 DUSP8Q13202 625 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 FAM50AQ14320 339 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 MUM1Q2TAK8 710 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 LMBR1LQ6UX01 489 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 LIMS2Q7Z4I7 341 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 TAX1BP1Q86VP1 789 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 CIR1Q86X95 450 aaPredicted RBP7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 AUTS2Q8WXX7 1259 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 PAWRQ96IZ0 340 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 DPYSL5Q9BPU6 564 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 C12orf65Q9H3J6 166 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 DPP7Q9UHL4 492 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 TRHDEQ9UKU6 1024 aa7.7□□□□□ -1.18
CCDC88A-206ENST00000430086 CDC14BO60729 498 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 JUNP05412 331 aaKnown RBP7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 SYN1P17600 705 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 MTNR1BP49286 362 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 BPIFB4P59827 614 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 IGBP1P78318 339 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 MEF2AQ02078 507 aaPredicted RBP7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 PLP2Q04941 152 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 MGAT5Q09328 741 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 TAS1R1Q7RTX1 841 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 PIK3C3Q8NEB9 887 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 TSPEARQ8WU66 669 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 GNRHR2Q96P88 292 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 QRSL1Q9H0R6 528 aaKnown RBP7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 NELFAQ9H3P2 528 aa7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 TYW1Q9NV66 732 aaKnown RBP7.69□□□□□ -1.18
CCDC88A-206ENST00000430086 TOX4O94842 621 aa7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 RPS19P39019 145 aaKnown RBP7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 SRSF2Q01130 221 aaKnown RBP7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 ANO4Q32M45 955 aa7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 TOR2AQ5JU69 321 aa7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 TCTN3Q6NUS6 607 aa7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 GPR135Q8IZ08 494 aa7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 ANKRD53Q8N9V6 530 aa7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 SHCBP1Q8NEM2 672 aa7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 DNERQ8NFT8 737 aa7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 SAMD11Q96NU1 681 aa7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 GPHA2Q96T91 129 aa7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 CCDC8Q9H0W5 538 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 DNAJC28Q9NX36 388 aa7.68□□□□□ -1.18
CCDC88A-206ENST00000430086 PATE3B3GLJ2 98 aa7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 K7ESM1 405 aa7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 GABRDO14764 452 aa7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 CFBP00751 764 aa7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 IARSP41252 1262 aaKnown RBP7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 RIN1Q13671 783 aa7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 SAFB2Q14151 953 aaKnown RBP eCLIP7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 AMOTL1Q8IY63 956 aa7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 GIMAP8Q8ND71 665 aaPredicted RBP7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 C1orf162Q8NEQ5 155 aaPredicted RBP7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 SSH1Q8WYL5 1049 aa7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 MTMR8Q96EF0 704 aa7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 RPL10LQ96L21 214 aaKnown RBP7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 PLA2G12BQ9BX93 195 aa7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 ASPSCR1Q9BZE9 553 aa7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 AGO3Q9H9G7 860 aaKnown RBP7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 IFT122Q9HBG6 1241 aa7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 ZNF277Q9NRM2 450 aaPredicted RBP7.67□□□□□ -1.18
CCDC88A-206ENST00000430086 RAD17O75943 681 aa7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 ALDH1A2O94788 518 aa7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 LTA4HP09960 611 aaKnown RBP7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 RBP3P10745 1247 aa7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 SLC5A3P53794 718 aa7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 KRT85P78386 507 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms