RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 F5P12259 2224 aa5.55□□□□□ -1.52
RIF1-203ENST00000428287 SPATA31A1Q5TZJ5 1347 aa5.55□□□□□ -1.52
RIF1-203ENST00000428287 SYNGAP1Q96PV0 1343 aa5.55□□□□□ -1.52
RIF1-203ENST00000428287 TCP11X1B4DZS4 312 aa5.55□□□□□ -1.52
RIF1-203ENST00000428287 LMNAP02545 664 aaKnown RBP5.55□□□□□ -1.52
RIF1-203ENST00000428287 CCDC166P0CW27 439 aa5.55□□□□□ -1.52
RIF1-203ENST00000428287 NOVP48745 357 aa5.55□□□□□ -1.52
RIF1-203ENST00000428287 C4orf50Q6ZRC1 276 aa5.55□□□□□ -1.52
RIF1-203ENST00000428287 BLIDQ8IZY5 108 aa5.55□□□□□ -1.52
RIF1-203ENST00000428287 STKLD1Q8NE28 680 aa5.55□□□□□ -1.52
RIF1-203ENST00000428287 PIH1D3Q9NQM4 214 aaKnown RBP5.55□□□□□ -1.52
RIF1-203ENST00000428287 ZDHHC7Q9NXF8 308 aa5.55□□□□□ -1.52
RIF1-203ENST00000428287 FAM205AQ6ZU69 1335 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 KRIT1O00522 736 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 SKIP12755 728 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 FXR2P51116 673 aaKnown RBP eCLIP5.54□□□□□ -1.524e-7■■■■□ 25.9
RIF1-203ENST00000428287 KIAA1755Q5JYT7 1200 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 HIC2Q96JB3 615 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 RAB3IPQ96QF0 476 aaPredicted RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 IRAK4Q9NWZ3 460 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 THRAP3Q9Y2W1 955 aaKnown RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 COL4A3BPQ9Y5P4 624 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 USH1CQ9Y6N9 552 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 F8W8V4 182 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 SETSIPP0DME0 302 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 SFSWAPQ12872 951 aaKnown RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 LMNTD2Q8IXW0 634 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 SYCE1Q8N0S2 351 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 SLC30A5Q8TAD4 765 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 OSBPL1AQ9BXW6 950 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 KCTD10Q9H3F6 313 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 CYLDQ9NQC7 956 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 PARP2Q9UGN5 583 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 RP1L1Q8IWN7 2480 aaPredicted RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 PALM3A6NDB9 673 aaPredicted RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 SMIM24O75264 130 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 ASMTLO95671 621 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 TTC4O95801 387 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 UCHL3P15374 230 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 RASA1P20936 1047 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 RASGRF1Q13972 1273 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 TAF11Q15544 211 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 VSTM1Q6UX27 236 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 LARGE2Q8N3Y3 721 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 BRIP1Q9BX63 1249 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 MIS12Q9H081 205 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 PCMTD2Q9NV79 361 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 ATXN10Q9UBB4 475 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 PCDHA2Q9Y5H9 948 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.54□□□□□ -1.52
RIF1-203ENST00000428287 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 MED12Q93074 2177 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 FANCMQ8IYD8 2048 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 CREB1P16220 341 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 WDR4P57081 412 aaKnown RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 DYNC1I2Q13409 638 aaKnown RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 DCAF12L1Q5VU92 463 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 FOXP3Q9BZS1 431 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 C17orf75Q9HAS0 396 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 LRRC4CQ9HCJ2 640 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 NDUFA13Q9P0J0 144 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 IDH1O75874 414 aaKnown RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 MTA2O94776 668 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 GH1P01241 217 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 DEUP1Q05D60 604 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 HNRNPDQ14103 355 aaKnown RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 GRM2Q14416 872 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 SFMBT2Q5VUG0 894 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 TMEM174Q8WUU8 243 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 DNAJC9Q8WXX5 260 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 MAML1Q92585 1016 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 ZNF184Q99676 751 aaPredicted RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 SENP1Q9P0U3 644 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 RLFQ13129 1914 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 KNTC1P50748 2209 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 BRCA1P38398 1863 aaKnown RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 USP34Q70CQ2 3546 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 MYMKA6NI61 221 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 ADAMTS3O15072 1205 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 SLC26A4O43511 780 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 PLEKHA8P1O95397 391 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 GGPS1O95749 300 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 FTCDO95954 541 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 H2AFZP0C0S5 128 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 PUM3Q15397 648 aaKnown RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 HHATQ5VTY9 493 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 H2AFVQ71UI9 128 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 ZNF571Q7Z3V5 609 aaPredicted RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 PEX26Q7Z412 305 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 CLNKQ7Z7G1 428 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 RIBC1Q8N443 379 aaPredicted RBP5.54□□□□□ -1.52
RIF1-203ENST00000428287 PACSIN1Q9BY11 444 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 VCXQ9H320 206 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 VCX3BQ9H321 246 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 VCX3AQ9NNX9 186 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 UBN1Q9NPG3 1134 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 DLGAP2Q9P1A6 1054 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 PDP2Q9P2J9 529 aa5.54□□□□□ -1.52
RIF1-203ENST00000428287 PITPNM2Q9BZ72 1349 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 MTCL1Q9Y4B5 1905 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms