RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TCEA2Q15560 299 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 CYP4F22Q6NT55 531 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 ZCCHC8Q6NZY4 707 aaKnown RBP3.21□□□□□ -1.9
VPS13A-208ENST00000423463 C16orf86Q6ZW13 317 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 OVCH1Q7RTY7 1134 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 PROSER1Q86XN7 944 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 DHX37Q8IY37 1157 aaKnown RBP3.21□□□□□ -1.9
VPS13A-208ENST00000423463 LINC00482Q8N8I6 264 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 KYQ8NBH2 561 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 RUNDC1Q96C34 613 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 ADAM7Q9H2U9 754 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 SAMD15Q9P1V8 674 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 SBF2Q86WG5 1849 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 TNS1Q9HBL0 1735 aaKnown RBP3.2□□□□□ -1.9
VPS13A-208ENST00000423463 INHBBP09529 407 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 NAT1P18440 290 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 IGFALSP35858 605 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 TMPOP42166 694 aaKnown RBP3.2□□□□□ -1.9
VPS13A-208ENST00000423463 EPHA5P54756 1037 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 LMOD3Q0VAK6 560 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 TAF7Q15545 349 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-208ENST00000423463 SKIDA1Q1XH10 827 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 FNDC3BQ53EP0 1204 aaKnown RBP3.2□□□□□ -1.9
VPS13A-208ENST00000423463 FIGNQ5HY92 759 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 BTBD8Q5XKL5 378 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 MCTP2Q6DN12 878 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 VASNQ6EMK4 673 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 NOSTRINQ8IVI9 506 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 TRIM48Q8IWZ4 208 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 PNISRQ8TF01 805 aaKnown RBP3.2□□□□□ -1.9
VPS13A-208ENST00000423463 NTMQ9P121 344 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 ATP23Q9Y6H3 246 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 CEMIPQ8WUJ3 1361 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 DDX3XO00571 662 aaKnown RBP eCLIP3.2□□□□□ -1.9
VPS13A-208ENST00000423463 GSTA4O15217 222 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 MLLT6P55198 1093 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-208ENST00000423463 RIPK4P57078 832 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 RBM10P98175 930 aaKnown RBP3.2□□□□□ -1.9
VPS13A-208ENST00000423463 IRF9Q00978 393 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 PFKPQ01813 784 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 PRAMEF18Q5VWM3 479 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 EGFLAMQ63HQ2 1017 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 CNNM4Q6P4Q7 775 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 TMEM151BQ8IW70 566 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 TTC5Q8N0Z6 440 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 TEX13AQ9BXU3 409 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-208ENST00000423463 ZCCHC4Q9H5U6 513 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 BABAM1Q9NWV8 329 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 TFCP2L1Q9NZI6 479 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 ZFP69BQ9UJL9 534 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 SHANK3Q9BYB0 1731 aa3.2□□□□□ -1.9
VPS13A-208ENST00000423463 KAT6BQ8WYB5 2073 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 RGPD3A6NKT7 1758 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-208ENST00000423463 RGPD4Q7Z3J3 1758 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 RASSF10A6NK89 507 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 BTBD11A6QL63 1104 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 RPS6KA4O75676 772 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 APPP05067 770 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 MMEP08473 750 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 SLC39A6Q13433 755 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 ITPK1Q13572 414 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 TMEM132BQ14DG7 1078 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 ZNF827Q17R98 1081 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 CCDC184Q52MB2 194 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 PKN3Q6P5Z2 889 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 ZNF790Q6PG37 636 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 MCM10Q7L590 875 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 LRRTM3Q86VH5 581 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 NIM1KQ8IY84 436 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 CARFQ8N187 725 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 C2orf69Q8N8R5 385 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 TTLL11Q8NHH1 800 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 KCNC2Q96PR1 638 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 FEZ1Q99689 392 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 TACO1Q9BSH4 297 aaKnown RBP3.19□□□□□ -1.9
VPS13A-208ENST00000423463 SPON1Q9HCB6 807 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 BTAF1O14981 1849 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 OTOL1A6NHN0 477 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-208ENST00000423463 SLURP1P55000 103 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 DBPQ10586 325 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-208ENST00000423463 DCTN1Q14203 1278 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 PLEKHG4Q58EX7 1191 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 DALRD3Q5D0E6 543 aaKnown RBP3.19□□□□□ -1.9
VPS13A-208ENST00000423463 HHIPL2Q6UWX4 724 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 CCDC146Q8IYE0 955 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 STPG3Q8N7X2 389 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 ZCCHC14Q8WYQ9 949 aaKnown RBP3.19□□□□□ -1.9
VPS13A-208ENST00000423463 ERCC4Q92889 916 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-208ENST00000423463 CLIC6Q96NY7 704 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 MTFR1LQ9H019 292 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 UCKL1Q9NWZ5 548 aa3.19□□□□□ -1.9
VPS13A-208ENST00000423463 H2AFY2Q9P0M6 372 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-208ENST00000423463 PNPLA7Q6ZV29 1317 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 SH3D21A4FU49 640 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 ZNF891A8MT65 544 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 CCER2I3L3R5 266 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 TRAF5O00463 557 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 APAF1O14727 1248 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 STARD3NLO95772 234 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 ASLP04424 464 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms