RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 FDPSP14324 419 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 SPIRE1Q08AE8 756 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 NR5A1Q13285 461 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 KCNC3Q14003 757 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 SMC1AQ14683 1233 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 BMS1Q14692 1282 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 ME3Q16798 604 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 EARS2Q5JPH6 523 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 TMC7Q7Z402 723 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 SRGAP1Q7Z6B7 1085 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 RNF135Q8IUD6 432 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 KSR1Q8IVT5 923 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 NECAB1Q8N987 351 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 NSUN7Q8NE18 718 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 TCP11Q8WWU5 503 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 SUSD6Q92537 303 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 PGBD4Q96DM1 585 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 TMEM169Q96HH4 297 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 PHF7Q9BWX1 381 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 MUTYHQ9UIF7 546 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 MUC6Q6W4X9 2439 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 LOC730098B7Z3J9 87 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 ZC3H11AO75152 810 aaKnown RBP eCLIP12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 LARGE1O95461 756 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 HOXB8P17481 243 aaPredicted RBP12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 BCAR1P56945 870 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 RBM10P98175 930 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 CYP4A11Q02928 519 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 LAMTOR4Q0VGL1 99 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 TRIM29Q14134 588 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 CBX2Q14781 532 aaPredicted RBP12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 PCBP1Q15365 356 aaKnown RBP eCLIP12.9□□□□□ -0.341e-6■□□□□ 8.3
SQSTM1-203ENST00000422245 CALCRLQ16602 461 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 NOMO2Q5JPE7 1267 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 ANKRD54Q6NXT1 300 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 DIS3L2Q8IYB7 885 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 PRPF31Q8WWY3 499 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 CASP10Q92851 521 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 TMEM143Q96AN5 459 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 DYDC2Q96IM9 177 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 TBC1D13Q9NVG8 400 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 RGL1Q9NZL6 768 aa12.9□□□□□ -0.34
SQSTM1-203ENST00000422245 CNTNAP2Q9UHC6 1331 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 C2orf71A6NGG8 1288 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 ASAP2O43150 1006 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 NEMFO60524 1076 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 DTNBO60941 627 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 LYPLA2O95372 231 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 TECP42680 631 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 NEK4P51957 841 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 RNASELQ05823 741 aaKnown RBP12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 CTTNQ14247 550 aaKnown RBP12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 XKR9Q5GH70 373 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 LLGL2Q6P1M3 1020 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 FERMT3Q86UX7 667 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 MRPL43Q8N983 215 aaKnown RBP12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 ZNF579Q8NAF0 562 aaKnown RBP12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 RNF149Q8NC42 400 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 URGCPQ8TCY9 931 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 LPPQ93052 612 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 MTRQ99707 1265 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 BMP2KQ9NSY1 1161 aaPredicted RBP12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 STK39Q9UEW8 545 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 INPP5FQ9Y2H2 1132 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 PCDHB2Q9Y5E7 798 aa12.89□□□□□ -0.35
SQSTM1-203ENST00000422245 JAK2O60674 1132 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 OFD1O75665 1012 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 ERLIN2O94905 339 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 SRGAP2CP0DJJ0 459 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 GIT2Q14161 759 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 TFDP1Q14186 410 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 MXD4Q14582 209 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 TPRNQ4KMQ1 711 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 SYCE2Q6PIF2 218 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 DDX53Q86TM3 631 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 TPH2Q8IWU9 490 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 CCDC51Q96ER9 411 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 IGSF21Q96ID5 467 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 CCDC43Q96MW1 224 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 EIF2AK1Q9BQI3 630 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 ZBP1Q9H171 429 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 S1PR5Q9H228 398 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 KCNH6Q9H252 994 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 MINDY3Q9H8M7 445 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 RSAD1Q9HA92 442 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 PCDHA12Q9UN75 941 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 HCFC2Q9Y5Z7 792 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 IRAK3Q9Y616 596 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 PIEZO1Q92508 2521 aa12.88□□□□□ -0.35
SQSTM1-203ENST00000422245 C5orf42Q9H799 3197 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 ZNF318Q5VUA4 2279 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 MEIS3P2A8K0S8 358 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 BTBD18B2RXH4 712 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 NT5C1B-RDH14C9J2C7 533 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 CLASP2O75122 1294 aaKnown RBP12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 DGAT1O75907 488 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 SLITRK3O94933 977 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 GALTP07902 379 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 CTSAP10619 480 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms