RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 MFSD14CQ5VZR4 134 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 KRT39Q6A163 491 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 ARMCX2Q7L311 632 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 RNF10Q8N5U6 811 aaKnown RBP9.12□□□□□ -0.95
USP54-203ENST00000418501 MSANTD4Q8NCY6 345 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 DHX38Q92620 1227 aaKnown RBP9.12□□□□□ -0.95
USP54-203ENST00000418501 ACBD3Q9H3P7 528 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 FZD1Q9UP38 647 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 ATG7O95352 703 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 NPTX2P47972 431 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 FMO5P49326 533 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 GPS2Q13227 327 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 DGKDQ16760 1214 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 RGMBQ6NW40 437 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 SUGCTQ9HAC7 445 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 LZTFL1Q9NQ48 299 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 SEPT11Q9NVA2 429 aaKnown RBP9.12□□□□□ -0.95
USP54-203ENST00000418501 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.12□□□□□ -0.95
USP54-203ENST00000418501 EMSYQ7Z589 1322 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 SYNGAP1Q96PV0 1343 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 RSPH10B2B2RC85 870 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 EXTL3O43909 919 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 PPFIA4O75335 1185 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 TNNC2P02585 160 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 RSPH10BP0C881 870 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 BIRC3Q13489 604 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 TRPC3Q13507 836 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 PCBP1Q15365 356 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP54-203ENST00000418501 ZPBP2Q6X784 338 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 EEPD1Q7L9B9 569 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 RSPH3Q86UC2 560 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 IRF2BP1Q8IU81 584 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 HACE1Q8IYU2 909 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 TTC39CQ8N584 583 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 NTPCRQ9BSD7 190 aaKnown RBP9.12□□□□□ -0.95
USP54-203ENST00000418501 SELENOOQ9BVL4 669 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 PLVAPQ9BX97 442 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 NLRC4Q9NPP4 1024 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 DDX41Q9UJV9 622 aaKnown RBP9.12□□□□□ -0.95
USP54-203ENST00000418501 ABT1Q9ULW3 272 aaKnown RBP9.12□□□□□ -0.95
USP54-203ENST00000418501 GUCA1BQ9UMX6 200 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 M0QZ92 97 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 ATP9AO75110 1047 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 FARP2O94887 1054 aaPredicted RBP9.12□□□□□ -0.95
USP54-203ENST00000418501 CCNE2O96020 404 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 TNNI1P19237 187 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 ADORA2AP29274 412 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 HNRNPH3P31942 346 aaKnown RBP9.12□□□□□ -0.95
USP54-203ENST00000418501 ZNF662Q6ZS27 426 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 SMC1BQ8NDV3 1235 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 TRIM11Q96F44 468 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 STK33Q9BYT3 514 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 PORCNQ9H237 461 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 INTS13Q9NVM9 706 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 LCMT1Q9UIC8 334 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 SCN4AP35499 1836 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 SOWAHBA6NEL2 793 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 BTBD19C9JJ37 291 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 FECHP22830 423 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 CETN2P41208 172 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 FXR1P51114 621 aaKnown RBP eCLIP9.11□□□□□ -0.95
USP54-203ENST00000418501 ARID5BQ14865 1188 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 MEA1Q16626 185 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 E4F1Q66K89 784 aaPredicted RBP9.11□□□□□ -0.95
USP54-203ENST00000418501 PLA2G4FQ68DD2 849 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 METTL13Q8N6R0 699 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 OR6J1Q8NGC5 347 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 TMEM174Q8WUU8 243 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 PRMT7Q9NVM4 692 aaPredicted RBP9.11□□□□□ -0.95
USP54-203ENST00000418501 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.11□□□□□ -0.95
USP54-203ENST00000418501 ATAD5Q96QE3 1844 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 ANO9A1A5B4 782 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 SOWAHDA6NJG2 315 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 KIF4AO95239 1232 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 CPT1AP50416 773 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 KIF11P52732 1056 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 NPEPPSP55786 919 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 MORC4Q8TE76 937 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 CTNNBL1Q8WYA6 563 aaPredicted RBP9.11□□□□□ -0.95
USP54-203ENST00000418501 MSTO1Q9BUK6 570 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 RNF14Q9UBS8 474 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 PAPPA2Q9BXP8 1791 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 CTAGE15A4D2H0 777 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 PMM2O15305 246 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 CLDN3O15551 220 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 XPOTO43592 962 aaKnown RBP9.11□□□□□ -0.95
USP54-203ENST00000418501 MAFO75444 373 aaPredicted RBP9.11□□□□□ -0.95
USP54-203ENST00000418501 CTAGE8P0CG41 777 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 TBXAS1P24557 533 aaPredicted RBP9.11□□□□□ -0.95
USP54-203ENST00000418501 FCGRTP55899 365 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 MAPK8IP2Q13387 824 aaPredicted RBP9.11□□□□□ -0.95
USP54-203ENST00000418501 MIIPQ5JXC2 388 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 NYAP1Q6ZVC0 841 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 CTAGE6Q86UF2 777 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 CTAGE4Q8IX94 777 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 CNKSR2Q8WXI2 1034 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 INTS2Q9H0H0 1204 aaKnown RBP9.11□□□□□ -0.95
USP54-203ENST00000418501 TMEM8AQ9HCN3 771 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 AGO2Q9UKV8 859 aaKnown RBP9.11□□□□□ -0.95
USP54-203ENST00000418501 INTUQ9ULD6 942 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms