RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SGSM2O43147 1006 aa7.9□□□□□ -1.14
USP40-202ENST00000409945 HYAL3O43820 417 aaPredicted RBP7.9□□□□□ -1.14
USP40-202ENST00000409945 PARNO95453 639 aaKnown RBP7.9□□□□□ -1.14
USP40-202ENST00000409945 HMGB1P09429 215 aaKnown RBP7.9□□□□□ -1.14
USP40-202ENST00000409945 CORO7P57737 925 aa7.9□□□□□ -1.14
USP40-202ENST00000409945 AIMP1Q12904 312 aaKnown RBP7.9□□□□□ -1.14
USP40-202ENST00000409945 NR0B2Q15466 257 aa7.9□□□□□ -1.14
USP40-202ENST00000409945 CRY1Q16526 586 aa7.9□□□□□ -1.14
USP40-202ENST00000409945 CCDC184Q52MB2 194 aa7.9□□□□□ -1.14
USP40-202ENST00000409945 BICRALQ6AI39 1079 aa7.9□□□□□ -1.14
USP40-202ENST00000409945 PRR5LQ6MZQ0 368 aa7.9□□□□□ -1.14
USP40-202ENST00000409945 SMAD5Q99717 465 aaKnown RBP7.9□□□□□ -1.14
USP40-202ENST00000409945 EPB41L1Q9H4G0 881 aa7.9□□□□□ -1.14
USP40-202ENST00000409945 N4BP2Q86UW6 1770 aaPredicted RBP7.9□□□□□ -1.15
USP40-202ENST00000409945 RNF123Q5XPI4 1314 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 FITM1A5D6W6 292 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 CCER2I3L3R5 266 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 DGKIO75912 1065 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 PRKD3O94806 890 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 WNT11O96014 354 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 ZNF853P0CG23 659 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 CHRNA5P30532 468 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 ALDH1B1P30837 517 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 CYP4F8P98187 520 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 GALNT18Q6P9A2 607 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 COPS6Q7L5N1 327 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 CLEC4DQ8WXI8 215 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 MTMR8Q96EF0 704 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 TNFRSF12AQ9NP84 129 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 CABP5Q9NP86 173 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 SLC6A20Q9NP91 592 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 SLC5A4Q9NY91 659 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 SRPK3Q9UPE1 567 aa7.9□□□□□ -1.15
USP40-202ENST00000409945 AFDNP55196 1824 aaKnown RBP7.89□□□□□ -1.15
USP40-202ENST00000409945 ATP10DQ9P241 1426 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 FAM90A27PA6NNH2 459 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 NPR1P16066 1061 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 IRF9Q00978 393 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 CHRNEQ04844 493 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 GPR19Q15760 415 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 ZMYM1Q5SVZ6 1142 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 STEAP3Q658P3 488 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 HHIPL2Q6UWX4 724 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 TTLL7Q6ZT98 887 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 RIOX2Q8IUF8 465 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 CNTD1Q8N815 330 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 CLRN3Q8NCR9 226 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 ARRDC4Q8NCT1 418 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 RPGRQ92834 1020 aaKnown RBP7.89□□□□□ -1.15
USP40-202ENST00000409945 MASTLQ96GX5 879 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 ELF4Q99607 663 aaPredicted RBP7.89□□□□□ -1.15
USP40-202ENST00000409945 RC3H2Q9HBD1 1191 aaKnown RBP7.89□□□□□ -1.15
USP40-202ENST00000409945 CHPF2Q9P2E5 772 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 DSEQ9UL01 958 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 NRXN2Q9P2S2 1712 aa7.89□□□□□ -1.15
USP40-202ENST00000409945 IBTKQ9P2D0 1353 aaPredicted RBP7.89□□□□□ -1.15
USP40-202ENST00000409945 A0A1W2PQ27 194 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 A0A1W2PQ64 194 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 A0A1W2PQC6 194 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 A0A1W2PQD8 194 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 ZC3H12DA2A288 527 aaKnown RBP7.88□□□□□ -1.15
USP40-202ENST00000409945 RASSF10A6NK89 507 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 ELL2O00472 640 aaPredicted RBP7.88□□□□□ -1.15
USP40-202ENST00000409945 SCDO00767 359 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 GAS7O60861 476 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 DBHP09172 617 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 GPTP24298 496 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 HLFQ16534 295 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 ODR4Q5SWX8 454 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 PLBD2Q8NHP8 589 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 UHMK1Q8TAS1 419 aaKnown RBP7.88□□□□□ -1.15
USP40-202ENST00000409945 MYLIPQ8WY64 445 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 UTP14AQ9BVJ6 771 aaKnown RBP7.88□□□□□ -1.15
USP40-202ENST00000409945 ADGRE2Q9UHX3 823 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 GABRDO14764 452 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 EXOSC10Q01780 885 aaKnown RBP7.88□□□□□ -1.15
USP40-202ENST00000409945 NEXNQ0ZGT2 675 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 TWISTNBQ3B726 338 aaPredicted RBP7.88□□□□□ -1.15
USP40-202ENST00000409945 ATP13A4Q4VNC1 1196 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 MROH9Q5TGP6 573 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 KIF18BQ86Y91 864 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 OXR1Q8N573 874 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 PALD1Q9ULE6 856 aa7.88□□□□□ -1.15
USP40-202ENST00000409945 GOLGB1Q14789 3259 aaKnown RBP7.87□□□□□ -1.15
USP40-202ENST00000409945 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.87□□□□□ -1.15
USP40-202ENST00000409945 ANXA1P04083 346 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 TMEM253P0C7T8 217 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 KCNA3P22001 575 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 ITKQ08881 620 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 TCIRG1Q13488 830 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 KRT24Q2M2I5 525 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 ESRP1Q6NXG1 681 aaKnown RBP7.87□□□□□ -1.15
USP40-202ENST00000409945 ZNF34Q8IZ26 560 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 CBARPQ8N350 705 aaPredicted RBP7.87□□□□□ -1.15
USP40-202ENST00000409945 RBM17Q96I25 401 aaKnown RBP7.87□□□□□ -1.15
USP40-202ENST00000409945 SYT3Q9BQG1 590 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 TRMT112Q9UI30 125 aaKnown RBP7.87□□□□□ -1.15
USP40-202ENST00000409945 TRHDEQ9UKU6 1024 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 ZKSCAN5Q9Y2L8 839 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 COA3Q9Y2R0 106 aaPredicted RBP7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms