RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ANKFY1Q9P2R3 1169 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 SEPT9Q9UHD8 586 aaPredicted RBP14.5□□□□□ -0.09
VPS54-203ENST00000409558 ANKRD63C9JTQ0 380 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 NDUFAB1O14561 156 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 HNRNPDLO14979 420 aaKnown RBP14.5□□□□□ -0.09
VPS54-203ENST00000409558 PJA2O43164 708 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 TUBBP07437 444 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 TKFCQ3LXA3 575 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 HSPBP1Q9NZL4 362 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 USTQ9Y2C2 406 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 SLX4Q8IY92 1834 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 FRMD3A2A2Y4 597 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 DENND3A2RUS2 1198 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 GAP43P17677 238 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 MXI1P50539 228 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 RNF207Q6ZRF8 634 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 IQCDQ96DY2 449 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 INPP4AQ96PE3 977 aaPredicted RBP14.5□□□□□ -0.09
VPS54-203ENST00000409558 LRRC4CQ9HCJ2 640 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 ZNF394Q53GI3 561 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 TAX1BP1Q86VP1 789 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 CDR2LQ86X02 465 aaPredicted RBP14.49□□□□□ -0.09
VPS54-203ENST00000409558 FAM213AQ9BRX8 229 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 ADAM33Q9BZ11 813 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 MYOZ2Q9NPC6 264 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 APEX2Q9UBZ4 518 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 FBXL5Q9UKA1 691 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 COL24A1Q17RW2 1714 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 PLSCR1O15162 318 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 VIL1P09327 827 aaKnown RBP14.49□□□□□ -0.09
VPS54-203ENST00000409558 FERP16591 822 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 CIITAP33076 1130 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 QARSP47897 775 aaKnown RBP14.49□□□□□ -0.09
VPS54-203ENST00000409558 ACOT2P49753 483 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 SEPT14Q6ZU15 432 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 PRPF38AQ8NAV1 312 aaKnown RBP14.49□□□□□ -0.09
VPS54-203ENST00000409558 SLC5A5Q92911 643 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 MRRFQ96E11 262 aaKnown RBP14.49□□□□□ -0.09
VPS54-203ENST00000409558 WRNIP1Q96S55 665 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 CETN1Q12798 172 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 MTM1Q13496 603 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 SNRNP48Q6IEG0 339 aaKnown RBP14.49□□□□□ -0.09
VPS54-203ENST00000409558 SPOPLQ6IQ16 392 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 MICALL1Q8N3F8 863 aa14.49□□□□□ -0.09
VPS54-203ENST00000409558 ZNF233A6NK53 670 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 OPA1O60313 960 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 LCA5LO95447 670 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 RARRES1P49788 294 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 IRAK1P51617 712 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 SEMA3FQ13275 785 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 SYTL5Q8TDW5 730 aaPredicted RBP14.48□□□□□ -0.09
VPS54-203ENST00000409558 TMEM143Q96AN5 459 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 MBOAT7Q96N66 472 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 CDK5RAP2Q96SN8 1893 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 ERVK-5Q9HDB9 667 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 TAF1LQ8IZX4 1826 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 MMEP08473 750 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 TNNI1P19237 187 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 HDLBPQ00341 1268 aaKnown RBP14.48□□□□□ -0.09
VPS54-203ENST00000409558 SF3B2Q13435 895 aaKnown RBP14.48□□□□□ -0.09
VPS54-203ENST00000409558 KRT71Q3SY84 523 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 SPDYE2Q495Y8 402 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 C7orf43Q8WVR3 580 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 RNPC3Q96LT9 517 aaKnown RBP14.48□□□□□ -0.09
VPS54-203ENST00000409558 CEP89Q96ST8 783 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 HEMGNQ9BXL5 484 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 TRIM7Q9C029 511 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 TUFT1Q9NNX1 390 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 COG5Q9UP83 839 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 PCDHGC5Q9Y5F6 944 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 MAST2Q6P0Q8 1798 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 GJB6O95452 261 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 P4HBP07237 508 aaKnown RBP14.48□□□□□ -0.09
VPS54-203ENST00000409558 ADRB2P07550 413 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 MARK3P27448 753 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 OSTNP61366 133 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 CIAPIN1Q6FI81 312 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 NLRX1Q86UT6 975 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 SUPT20HQ8NEM7 779 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 PLEKHO2Q8TD55 490 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 TATDN2Q93075 761 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 C18orf8Q96DM3 657 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 TSPYL1Q9H0U9 437 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 RNF146Q9NTX7 359 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 KLHL11Q9NVR0 708 aa14.48□□□□□ -0.09
VPS54-203ENST00000409558 IFI16Q16666 785 aaKnown RBP14.47□□□□□ -0.09
VPS54-203ENST00000409558 MICALL2Q8IY33 904 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 TCHPQ9BT92 498 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 EDEM3Q9BZQ6 932 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 E7EVH7 732 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 DPH6Q7L8W6 267 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 ALG3Q92685 438 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 KMT5AQ9NQR1 393 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 TSKSQ9UJT2 592 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 ZNRF3Q9ULT6 936 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 NOVA2Q9UNW9 492 aaKnown RBP14.47□□□□□ -0.09
VPS54-203ENST00000409558 CNTNAP1P78357 1384 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 NHSQ6T4R5 1651 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 DCDC2CA8MYV0 355 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 VCAM1P19320 739 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms