RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 LONRF1Q17RB8 773 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 MIGA2Q7L4E1 593 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 CATSPER3Q86XQ3 398 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 SRRM1Q8IYB3 904 aaKnown RBP12.82□□□□□ -0.36
HMGB1-206ENST00000405805 RAPGEF5Q92565 580 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 PAPOLBQ9NRJ5 636 aaKnown RBP12.82□□□□□ -0.36
HMGB1-206ENST00000405805 TTC7AQ9ULT0 858 aaPredicted RBP12.82□□□□□ -0.36
HMGB1-206ENST00000405805 DAGLAQ9Y4D2 1042 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 ARFGEF2Q9Y6D5 1785 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 RASSF10A6NK89 507 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 H0YIN7 160 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 ZNF189O75820 626 aaPredicted RBP12.81□□□□□ -0.36
HMGB1-206ENST00000405805 FAM107AO95990 144 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 ZNF543Q08ER8 600 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 ABCB5Q2M3G0 1257 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 OGFOD1Q8N543 542 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 FBXO25Q8TCJ0 367 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 BAP1Q92560 729 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 MCUR1Q96AQ8 359 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 DDX23Q9BUQ8 820 aaKnown RBP12.81□□□□□ -0.36
HMGB1-206ENST00000405805 CCDC188H7C350 402 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 TLR2O60603 784 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 TNNI1P19237 187 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 USP11P51784 963 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 COG2Q14746 738 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 MIER3Q7Z3K6 550 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 TRIM74Q86UV6 250 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 TRIM73Q86UV7 250 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 CHMP6Q96FZ7 201 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 ACP6Q9NPH0 428 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 PLCB1Q9NQ66 1216 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 MYH10P35580 1976 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 TESPA1A2RU30 521 aaPredicted RBP12.81□□□□□ -0.36
HMGB1-206ENST00000405805 CTCFP49711 727 aaPredicted RBP12.81□□□□□ -0.36
HMGB1-206ENST00000405805 NFIAQ12857 509 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 PDIA5Q14554 519 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 PASD1Q8IV76 773 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 TPCN2Q8NHX9 752 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 ZNF577Q9BSK1 485 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 THAP2Q9H0W7 228 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 DCDC2CA8MYV0 355 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 F5H6K3 240 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 ALAS1P13196 640 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 PON1P27169 355 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 KLRC3Q07444 240 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 TMED2Q15363 201 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 C18orf8Q96DM3 657 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 FGD4Q96M96 766 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 FNBP1Q96RU3 617 aa12.81□□□□□ -0.36
HMGB1-206ENST00000405805 GYS1P13807 737 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 SLC8A3P57103 927 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 SLC35G1Q2M3R5 365 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 SWT1Q5T5J6 900 aaKnown RBP12.8□□□□□ -0.36
HMGB1-206ENST00000405805 LMBRD2Q68DH5 695 aaPredicted RBP12.8□□□□□ -0.36
HMGB1-206ENST00000405805 CCDC137Q6PK04 289 aaKnown RBP12.8□□□□□ -0.36
HMGB1-206ENST00000405805 TEKT4Q8WW24 435 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 NAP1L4Q99733 375 aaKnown RBP12.8□□□□□ -0.36
HMGB1-206ENST00000405805 ISCUQ9H1K1 167 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 PRM3Q9NNZ6 103 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 LRRC4BQ9NT99 713 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 KLHL14Q9P2G3 628 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 LARSQ9P2J5 1176 aaKnown RBP12.8□□□□□ -0.36
HMGB1-206ENST00000405805 ALDH1B1P30837 517 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 SHROOM1Q2M3G4 852 aaPredicted RBP12.8□□□□□ -0.36
HMGB1-206ENST00000405805 XKR9Q5GH70 373 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 FIGNQ5HY92 759 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 MEI1Q5TIA1 1274 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 LRRC55Q6ZSA7 311 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 ZC3H18Q86VM9 953 aaKnown RBP12.8□□□□□ -0.36
HMGB1-206ENST00000405805 NLGN1Q8N2Q7 840 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 EIF2AK1Q9BQI3 630 aaKnown RBP12.8□□□□□ -0.36
HMGB1-206ENST00000405805 UBAP1Q9NZ09 502 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 ALS2Q96Q42 1657 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 PPIP5K2O43314 1243 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 ABCD1P33897 745 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 C16orf86Q6ZW13 317 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 VPS52Q8N1B4 723 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 SUPT20HQ8NEM7 779 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 ZKSCAN4Q969J2 545 aaPredicted RBP12.8□□□□□ -0.36
HMGB1-206ENST00000405805 RUSC1Q9BVN2 902 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 SYNCQ9H7C4 482 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 TDRD3Q9H7E2 651 aaKnown RBP12.8□□□□□ -0.36
HMGB1-206ENST00000405805 EHMT1Q9H9B1 1298 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.8□□□□□ -0.36
HMGB1-206ENST00000405805 INTUQ9ULD6 942 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 ZNF148Q9UQR1 794 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 IKBKGQ9Y6K9 419 aa12.8□□□□□ -0.36
HMGB1-206ENST00000405805 WDR78Q5VTH9 848 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 KDM7AQ6ZMT4 941 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 EPS8L3Q8TE67 593 aaKnown RBP12.79□□□□□ -0.36
HMGB1-206ENST00000405805 CSRNP1Q96S65 589 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 BATF3Q9NR55 127 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 KLHL11Q9NVR0 708 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 ZNF142P52746 1687 aaPredicted RBP12.79□□□□□ -0.36
HMGB1-206ENST00000405805 TCP11X1B4DZS4 312 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 GOLGA8SH3BPF8 625 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 GOLGA8MH3BSY2 632 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 OPLAHO14841 1288 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 GAS8O95995 478 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 PAPOLAP51003 745 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms