RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 POF1BQ8WVV4 589 aa14.97□□□□□ -0.01
VCX3A-202ENST00000398729 TCP11Q8WWU5 503 aa14.97□□□□□ -0.01
VCX3A-202ENST00000398729 TMEM143Q96AN5 459 aa14.97□□□□□ -0.01
VCX3A-202ENST00000398729 MSLNLQ96KJ4 702 aa14.97□□□□□ -0.01
VCX3A-202ENST00000398729 CASD1Q96PB1 797 aa14.97□□□□□ -0.01
VCX3A-202ENST00000398729 MTMR9Q96QG7 549 aa14.97□□□□□ -0.01
VCX3A-202ENST00000398729 FOXP1Q9H334 677 aaPredicted RBP14.97□□□□□ -0.01
VCX3A-202ENST00000398729 TYW1Q9NV66 732 aaKnown RBP14.97□□□□□ -0.01
VCX3A-202ENST00000398729 CLEC1BQ9P126 229 aa14.97□□□□□ -0.01
VCX3A-202ENST00000398729 RIF1Q5UIP0 2472 aaKnown RBP14.97□□□□□ -0.01
VCX3A-202ENST00000398729 ARID2Q68CP9 1835 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 LYPLA2O95372 231 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 EYA4O95677 639 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 SKIP12755 728 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 UBE3AQ05086 875 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 SMAD4Q13485 552 aaKnown RBP14.96□□□□□ -0.01
VCX3A-202ENST00000398729 GNL2Q13823 731 aaKnown RBP14.96□□□□□ -0.01
VCX3A-202ENST00000398729 EMC2Q15006 297 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 TWF2Q6IBS0 349 aaKnown RBP14.96□□□□□ -0.01
VCX3A-202ENST00000398729 CATSPER4Q7RTX7 472 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 BMP8AQ7Z5Y6 402 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 LRRC43Q8N309 656 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 COLGALT1Q8NBJ5 622 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 FBXO18Q8NFZ0 1043 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 PRPF31Q8WWY3 499 aaKnown RBP14.96□□□□□ -0.01
VCX3A-202ENST00000398729 CCDC43Q96MW1 224 aaKnown RBP14.96□□□□□ -0.01
VCX3A-202ENST00000398729 MTRQ99707 1265 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 HSD17B14Q9BPX1 270 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 CWH43Q9H720 699 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 UPF2Q9HAU5 1272 aaKnown RBP14.96□□□□□ -0.01
VCX3A-202ENST00000398729 IFT122Q9HBG6 1241 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 BMP2KQ9NSY1 1161 aaPredicted RBP14.96□□□□□ -0.01
VCX3A-202ENST00000398729 ANKEF1Q9NU02 776 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 RNF19AQ9NV58 838 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 CD207Q9UJ71 328 aa14.96□□□□□ -0.01
VCX3A-202ENST00000398729 PIN4Q9Y237 131 aaKnown RBP14.96□□□□□ -0.01
VCX3A-202ENST00000398729 PLXNA4Q9HCM2 1894 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 ZBTB39O15060 712 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 ASAP2O43150 1006 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 ST18O60284 1047 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 FGF18O76093 207 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 SRGAP2CP0DJJ0 459 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 LAMTOR4Q0VGL1 99 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 ORC2Q13416 577 aaPredicted RBP14.95□□□□□ -0.02
VCX3A-202ENST00000398729 TRIM67Q6ZTA4 783 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 SRGAP1Q7Z6B7 1085 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 ZNF598Q86UK7 904 aaKnown RBP14.95□□□□□ -0.02
VCX3A-202ENST00000398729 THNSL1Q8IYQ7 743 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 POP1Q99575 1024 aaKnown RBP14.95□□□□□ -0.02
VCX3A-202ENST00000398729 TRAIPQ9BWF2 469 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 TMEM60Q9H2L4 133 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 HCSTQ9UBK5 93 aa14.95□□□□□ -0.02
VCX3A-202ENST00000398729 POTEMA6NI47 508 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 ATF7P17544 494 aaPredicted RBP14.94□□□□□ -0.02
VCX3A-202ENST00000398729 PHKA2P46019 1235 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 CLLU1OSQ5K130 101 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 LRRC55Q6ZSA7 311 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 ADGRD2Q7Z7M1 963 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 FERMT3Q86UX7 667 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 RNF149Q8NC42 400 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 HELQQ8TDG4 1101 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 MICAL1Q8TDZ2 1067 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 RSPH1Q8WYR4 309 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 SNX27Q96L92 541 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 MRPL9Q9BYD2 267 aaKnown RBP14.94□□□□□ -0.02
VCX3A-202ENST00000398729 TLR9Q9NR96 1032 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 AGPAT5Q9NUQ2 364 aa14.94□□□□□ -0.02
VCX3A-202ENST00000398729 NOL7Q9UMY1 257 aaKnown RBP14.94□□□□□ -0.02
VCX3A-202ENST00000398729 TMEM221A6NGB7 291 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 LOC730098B7Z3J9 87 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 M0R296 226 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 DGAT1O75907 488 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 OR52Z1P0C646 297 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 XRCC6P12956 609 aaKnown RBP eCLIP14.93□□□□□ -0.02
VCX3A-202ENST00000398729 PPM1AP35813 382 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 TECP42680 631 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 TRAPPC10P48553 1259 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 RAB27AP51159 221 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 TCF15Q12870 199 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 MXD4Q14582 209 aaPredicted RBP14.93□□□□□ -0.02
VCX3A-202ENST00000398729 ZNF174Q15697 407 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 TTC38Q5R3I4 469 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 PDE12Q6L8Q7 609 aaKnown RBP14.93□□□□□ -0.02
VCX3A-202ENST00000398729 KCNT2Q6UVM3 1135 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 NOSTRINQ8IVI9 506 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 PBXIP1Q96AQ6 731 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 ZNF558Q96NG5 402 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 TUFT1Q9NNX1 390 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 XPNPEP1Q9NQW7 623 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 FAM105AQ9NUU6 356 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 PUF60Q9UHX1 559 aaKnown RBP14.93□□□□□ -0.02
VCX3A-202ENST00000398729 KIF3AQ9Y496 699 aa14.93□□□□□ -0.02
VCX3A-202ENST00000398729 ZNF623O75123 536 aa14.92□□□□□ -0.02
VCX3A-202ENST00000398729 RARRES1P49788 294 aa14.92□□□□□ -0.02
VCX3A-202ENST00000398729 ZXDAP98168 799 aa14.92□□□□□ -0.02
VCX3A-202ENST00000398729 PLCB3Q01970 1234 aa14.92□□□□□ -0.02
VCX3A-202ENST00000398729 KRT17Q04695 432 aa14.92□□□□□ -0.02
VCX3A-202ENST00000398729 COASYQ13057 564 aa14.92□□□□□ -0.02
VCX3A-202ENST00000398729 TFDP1Q14186 410 aa14.92□□□□□ -0.02
VCX3A-202ENST00000398729 CBX2Q14781 532 aaPredicted RBP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms