RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 PHF20L1A8MW92 1017 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 PODXLO00592 558 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 TOM1L1O75674 476 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 TAF12Q16514 161 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 C12orf60Q5U649 245 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 DARS2Q6PI48 645 aaKnown RBP11.54□□□□□ -0.56
CCDC40-204ENST00000397545 FOXP4Q8IVH2 680 aaPredicted RBP11.54□□□□□ -0.56
CCDC40-204ENST00000397545 DDX23Q9BUQ8 820 aaKnown RBP11.54□□□□□ -0.56
CCDC40-204ENST00000397545 LACRTQ9GZZ8 138 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 IFT122Q9HBG6 1241 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.54□□□□□ -0.56
CCDC40-204ENST00000397545 ESRRAP11474 423 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-204ENST00000397545 SLC9A1P19634 815 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 FGFR4P22455 802 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 CDO1Q16878 200 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 CCDC125Q86Z20 511 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 MCUQ8NE86 351 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 SAAL1Q96ER3 474 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 CHORDC1Q9UHD1 332 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-204ENST00000397545 ORC4O43929 436 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 SRGAP2CP0DJJ0 459 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 PADI6Q6TGC4 694 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 TRIM59Q8IWR1 403 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 XXYLT1Q8NBI6 393 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 RNPC3Q96LT9 517 aaKnown RBP11.53□□□□□ -0.56
CCDC40-204ENST00000397545 TARSL2A2RTX5 802 aaKnown RBP11.53□□□□□ -0.56
CCDC40-204ENST00000397545 F5H6K3 240 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 MCF2LO15068 1137 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 VEGFAP15692 232 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-204ENST00000397545 KLRC1P26715 233 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 KLRC3Q07444 240 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 MAP7D3Q8IWC1 876 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 PDIK1LQ8N165 341 aa11.53□□□□□ -0.56
CCDC40-204ENST00000397545 ZNF668Q96K58 619 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-204ENST00000397545 DHX36Q9H2U1 1008 aaKnown RBP11.53□□□□□ -0.56
CCDC40-204ENST00000397545 MYH14Q7Z406 1995 aaKnown RBP11.53□□□□□ -0.56
CCDC40-204ENST00000397545 K7ERI5 159 aa11.52□□□□□ -0.56
CCDC40-204ENST00000397545 RHOBTB3O94955 611 aa11.52□□□□□ -0.56
CCDC40-204ENST00000397545 KIF22Q14807 665 aa11.52□□□□□ -0.56
CCDC40-204ENST00000397545 CCDC137Q6PK04 289 aaKnown RBP11.52□□□□□ -0.56
CCDC40-204ENST00000397545 RNF207Q6ZRF8 634 aa11.52□□□□□ -0.56
CCDC40-204ENST00000397545 THNSL1Q8IYQ7 743 aa11.52□□□□□ -0.56
CCDC40-204ENST00000397545 NEDD1Q8NHV4 660 aa11.52□□□□□ -0.56
CCDC40-204ENST00000397545 ZIM3Q96PE6 472 aa11.52□□□□□ -0.56
CCDC40-204ENST00000397545 NGRNQ9NPE2 291 aaKnown RBP11.52□□□□□ -0.56
CCDC40-204ENST00000397545 TXLNGQ9NUQ3 528 aa11.52□□□□□ -0.56
CCDC40-204ENST00000397545 DMGDHQ9UI17 866 aaKnown RBP11.52□□□□□ -0.56
CCDC40-204ENST00000397545 HPSEQ9Y251 543 aa11.52□□□□□ -0.56
CCDC40-204ENST00000397545 FIS1Q9Y3D6 152 aa11.52□□□□□ -0.56
CCDC40-204ENST00000397545 COL1A1P02452 1464 aaPredicted RBP11.52□□□□□ -0.56
CCDC40-204ENST00000397545 MYH3P11055 1940 aa11.52□□□□□ -0.56
CCDC40-204ENST00000397545 MIF4GDA9UHW6 222 aaKnown RBP11.52□□□□□ -0.57
CCDC40-204ENST00000397545 H0YCG3 227 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 MEFVO15553 781 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-204ENST00000397545 PDHA1P08559 390 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 MTM1Q13496 603 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 GRIK5Q16478 980 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 KCTD6Q8NC69 237 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 CHMP6Q96FZ7 201 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 ETNK1Q9HBU6 452 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 ZNF233A6NK53 670 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 LUC7L3O95232 432 aaKnown RBP11.52□□□□□ -0.57
CCDC40-204ENST00000397545 CPP00450 1065 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 SEPT6Q14141 434 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 SLC18A3Q16572 532 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 AP1ARQ63HQ0 302 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 OR6B2Q6IFH4 312 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 PDXDC2PQ6P474 469 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 CFAP36Q96G28 342 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 ADPGKQ9BRR6 497 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 CELF4Q9BZC1 486 aaKnown RBP11.52□□□□□ -0.57
CCDC40-204ENST00000397545 NRBP2Q9NSY0 501 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 NOP53Q9NZM5 478 aaKnown RBP11.52□□□□□ -0.57
CCDC40-204ENST00000397545 NOD1Q9Y239 953 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 SYNGAP1Q96PV0 1343 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 EIF3HO15372 352 aaKnown RBP eCLIP11.52□□□□□ -0.57
CCDC40-204ENST00000397545 COPB2P35606 906 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 MDH1P40925 334 aaKnown RBP11.52□□□□□ -0.57
CCDC40-204ENST00000397545 GALCP54803 685 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 TROAPQ12815 778 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 TNFAIP1Q13829 316 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 TMED8Q6PL24 325 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-204ENST00000397545 GBP7Q8N8V2 638 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-204ENST00000397545 ZNF564Q8TBZ8 553 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-204ENST00000397545 TRIM11Q96F44 468 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 MED10Q9BTT4 135 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 MXD3Q9BW11 206 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 NUP85Q9BW27 656 aa11.52□□□□□ -0.57
CCDC40-204ENST00000397545 ALG13Q9NP73 1137 aaKnown RBP11.52□□□□□ -0.57
CCDC40-204ENST00000397545 TAF1P21675 1872 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 A6NJR5 290 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 H3BQF6 201 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 WNT7AO00755 349 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 CLGNO14967 610 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 MAPK13O15264 365 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 RAD51CO43502 376 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 EVI5O60447 810 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 SPAG7O75391 227 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 ASPHQ12797 758 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 PKN1Q16512 942 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms