RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 PRLRP16471 622 aa16.27■□□□□ 0.2
CBX3-202ENST00000396386 TCP1P17987 556 aaKnown RBP16.27■□□□□ 0.2
CBX3-202ENST00000396386 NAP1L1P55209 391 aaKnown RBP16.27■□□□□ 0.2
CBX3-202ENST00000396386 RTP1P59025 263 aa16.27■□□□□ 0.2
CBX3-202ENST00000396386 CETN1Q12798 172 aa16.27■□□□□ 0.2
CBX3-202ENST00000396386 XKR3Q5GH77 459 aa16.27■□□□□ 0.2
CBX3-202ENST00000396386 C9orf131Q5VYM1 1079 aa16.27■□□□□ 0.2
CBX3-202ENST00000396386 CC2D1AQ6P1N0 951 aaPredicted RBP16.27■□□□□ 0.2
CBX3-202ENST00000396386 NOA1Q8NC60 698 aaKnown RBP16.27■□□□□ 0.2
CBX3-202ENST00000396386 BSNDQ8WZ55 320 aa16.27■□□□□ 0.2
CBX3-202ENST00000396386 CDCA5Q96FF9 252 aa16.27■□□□□ 0.2
CBX3-202ENST00000396386 MMS19Q96T76 1030 aa16.27■□□□□ 0.2
CBX3-202ENST00000396386 CYP26B1Q9NR63 512 aa16.27■□□□□ 0.2
CBX3-202ENST00000396386 TELO2Q9Y4R8 837 aa16.27■□□□□ 0.2
CBX3-202ENST00000396386 DENND3A2RUS2 1198 aa16.27■□□□□ 0.19
CBX3-202ENST00000396386 SPDYE5A6NIY4 337 aa16.27■□□□□ 0.19
CBX3-202ENST00000396386 IRF6O14896 467 aa16.27■□□□□ 0.19
CBX3-202ENST00000396386 SORBS3O60504 671 aa16.27■□□□□ 0.19
CBX3-202ENST00000396386 GFPT2O94808 682 aa16.27■□□□□ 0.19
CBX3-202ENST00000396386 RHOXF2BP0C7M4 288 aa16.27■□□□□ 0.19
CBX3-202ENST00000396386 NCAPG2Q86XI2 1143 aa16.27■□□□□ 0.19
CBX3-202ENST00000396386 RHOXF2Q9BQY4 288 aa16.27■□□□□ 0.19
CBX3-202ENST00000396386 KIFC3Q9BVG8 833 aa16.27■□□□□ 0.19
CBX3-202ENST00000396386 ARFGAP3Q9NP61 516 aa16.27■□□□□ 0.19
CBX3-202ENST00000396386 RAB21Q9UL25 225 aa16.27■□□□□ 0.19
CBX3-202ENST00000396386 CXCL11O14625 94 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 EVI5O60447 810 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 TUBBP07437 444 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 CCDC172P0C7W6 258 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 KLRC1P26715 233 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 CBX1P83916 185 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 SP2Q02086 613 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 DRAP1Q14919 205 aaPredicted RBP16.26■□□□□ 0.19
CBX3-202ENST00000396386 KRT222Q8N1A0 295 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 CLMNQ96JQ2 1002 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 NTPCRQ9BSD7 190 aaKnown RBP16.26■□□□□ 0.19
CBX3-202ENST00000396386 PAGR1Q9BTK6 254 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 PACSIN1Q9BY11 444 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 POLR3FQ9H1D9 316 aaPredicted RBP16.26■□□□□ 0.19
CBX3-202ENST00000396386 XPNPEP1Q9NQW7 623 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 ZNF302Q9NR11 478 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 PDLIM7Q9NR12 457 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 NAGPAQ9UK23 515 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 NENFQ9UMX5 172 aa16.26■□□□□ 0.19
CBX3-202ENST00000396386 H0YCG3 227 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 ZNF185O15231 689 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 ATP8B1O43520 1251 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 PEX10O60683 326 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 SEC31AO94979 1220 aaKnown RBP16.25■□□□□ 0.19
CBX3-202ENST00000396386 ADRB2P07550 413 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 PNMA6AP0CW24 399 aaPredicted RBP16.25■□□□□ 0.19
CBX3-202ENST00000396386 YBX3P16989 372 aaKnown RBP eCLIP16.25■□□□□ 0.19
CBX3-202ENST00000396386 EDNRBP24530 442 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 ABCD1P33897 745 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 DLG4P78352 724 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 PPIL2Q13356 520 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 TTLL12Q14166 644 aaPredicted RBP16.25■□□□□ 0.19
CBX3-202ENST00000396386 ALKBH5Q6P6C2 394 aaKnown RBP16.25■□□□□ 0.19
CBX3-202ENST00000396386 SEPT14Q6ZU15 432 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 USP50Q70EL3 339 aaPredicted RBP16.25■□□□□ 0.19
CBX3-202ENST00000396386 CYFIP1Q7L576 1253 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 VTI1AQ96AJ9 217 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 IFT74Q96LB3 600 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 OSBPL9Q96SU4 736 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 PNKPQ96T60 521 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 ASCC2Q9H1I8 757 aaPredicted RBP16.25■□□□□ 0.19
CBX3-202ENST00000396386 FAM53CQ9NYF3 392 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 AGTPBP1Q9UPW5 1226 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 PCDHGC5Q9Y5F6 944 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 SYNGAP1Q96PV0 1343 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 ANKRD63C9JTQ0 380 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 ERLIN1O75477 346 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 ATG7O95352 703 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 OATP04181 439 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 UBA1P22314 1058 aaKnown RBP16.25■□□□□ 0.19
CBX3-202ENST00000396386 COPB2P35606 906 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 MXI1P50539 228 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 SOX10P56693 466 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 PPP3CAQ08209 521 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 EMC2Q15006 297 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 IFI16Q16666 785 aaKnown RBP16.25■□□□□ 0.19
CBX3-202ENST00000396386 MTERF2Q49AM1 385 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 EPC2Q52LR7 807 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 NFRKBQ6P4R8 1299 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 ZNF572Q7Z3I7 529 aaPredicted RBP16.25■□□□□ 0.19
CBX3-202ENST00000396386 LMO3Q8TAP4 145 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 L3MBTL3Q96JM7 780 aaPredicted RBP16.25■□□□□ 0.19
CBX3-202ENST00000396386 KCNH4Q9UQ05 1017 aa16.25■□□□□ 0.19
CBX3-202ENST00000396386 CEP350Q5VT06 3117 aa16.24■□□□□ 0.19
CBX3-202ENST00000396386 SOWAHBA6NEL2 793 aa16.24■□□□□ 0.19
CBX3-202ENST00000396386 NCK2O43639 380 aa16.24■□□□□ 0.19
CBX3-202ENST00000396386 PALMO75781 387 aa16.24■□□□□ 0.19
CBX3-202ENST00000396386 GCLMP48507 274 aa16.24■□□□□ 0.19
CBX3-202ENST00000396386 POLGP54098 1239 aaPredicted RBP16.24■□□□□ 0.19
CBX3-202ENST00000396386 FSTL1Q12841 308 aa16.24■□□□□ 0.19
CBX3-202ENST00000396386 SNRNP35Q16560 246 aaKnown RBP16.24■□□□□ 0.19
CBX3-202ENST00000396386 C1orf220Q5T0J3 134 aa16.24■□□□□ 0.19
CBX3-202ENST00000396386 PLEKHO2Q8TD55 490 aa16.24■□□□□ 0.19
CBX3-202ENST00000396386 TLR10Q9BXR5 811 aa16.24■□□□□ 0.19
CBX3-202ENST00000396386 GPR88Q9GZN0 384 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms