RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 GGCXP38435 758 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 NBPF12Q5TAG4 269 aaPredicted RBP10.46□□□□□ -0.74
COL6A3-204ENST00000392003 AP1ARQ63HQ0 302 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 PADI6Q6TGC4 694 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 KSR1Q8IVT5 923 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 RDH13Q8NBN7 331 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 FAM76AQ8TAV0 307 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 AGBL1Q96MI9 1066 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 KRT12Q99456 494 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 STK33Q9BYT3 514 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 TMEM206Q9H813 350 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 RAVER2Q9HCJ3 691 aaKnown RBP10.46□□□□□ -0.74
COL6A3-204ENST00000392003 INTUQ9ULD6 942 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 DAAM1Q9Y4D1 1078 aa10.46□□□□□ -0.74
COL6A3-204ENST00000392003 KIF4AO95239 1232 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 IVLP07476 585 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 TNFAIP3P21580 790 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 ZNF131P52739 623 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 GUCY2DQ02846 1103 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 WRNIP1Q96S55 665 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 EPB41L5Q9HCM4 733 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 WDR46O15213 610 aaKnown RBP10.45□□□□□ -0.74
COL6A3-204ENST00000392003 BCRP11274 1271 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 MYCLP12524 364 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-204ENST00000392003 INPP5BP32019 993 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 MTMR2Q13614 643 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 DRAP1Q14919 205 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-204ENST00000392003 ANGEL2Q5VTE6 544 aaKnown RBP10.45□□□□□ -0.74
COL6A3-204ENST00000392003 GJB7Q6PEY0 223 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 RBM46Q8TBY0 533 aaKnown RBP10.45□□□□□ -0.74
COL6A3-204ENST00000392003 CTNNBL1Q8WYA6 563 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-204ENST00000392003 ACCSQ96QU6 501 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 INTS2Q9H0H0 1204 aaKnown RBP10.45□□□□□ -0.74
COL6A3-204ENST00000392003 PLEKHA4Q9H4M7 779 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 SIX2Q9NPC8 291 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 CES2O00748 559 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 EVI5O60447 810 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 CTNND1O60716 968 aaKnown RBP10.45□□□□□ -0.74
COL6A3-204ENST00000392003 ADCY2Q08462 1091 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 COG2Q14746 738 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 ALS2CLQ60I27 953 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 NIPA1Q7RTP0 329 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 KLHL7Q8IXQ5 586 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 PARD3BQ8TEW8 1205 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 LPAR1Q92633 364 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 KAT2BQ92831 832 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 YIPF2Q9BWQ6 316 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 AS3MTQ9HBK9 375 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 KCNH7Q9NS40 1196 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 PNMA2Q9UL42 364 aa10.45□□□□□ -0.74
COL6A3-204ENST00000392003 ASTN2O75129 1339 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-204ENST00000392003 A0A0A6YYK5 440 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-204ENST00000392003 GOLGA8KD6RF30 607 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 SYF2O95926 243 aaKnown RBP10.44□□□□□ -0.74
COL6A3-204ENST00000392003 TRIM49P0CI25 452 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 TRIM49CP0CI26 452 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 TNFRSF8P28908 595 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 HSD17B4P51659 736 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 JAM2P57087 298 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 USP4Q13107 963 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 PPFIA1Q13136 1202 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 NNTQ13423 1086 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 MYBPC2Q14324 1141 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 ARHGAP44Q17R89 818 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 CFAP58Q5T655 872 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 DAAM2Q86T65 1068 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 KIRREL3Q8IZU9 778 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 USP38Q8NB14 1042 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 CCDC26Q8TAB7 109 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 ZNF483Q8TF39 744 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-204ENST00000392003 VTI1AQ96AJ9 217 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 IWS1Q96ST2 819 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 AMFRQ9UKV5 643 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 ZHX2Q9Y6X8 837 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 ZMYM2Q9UBW7 1377 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 ATP8B3O60423 1300 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 PGRMC1O00264 195 aaKnown RBP10.44□□□□□ -0.74
COL6A3-204ENST00000392003 NAT1P18440 290 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 PTGER2P43116 358 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 QARSP47897 775 aaKnown RBP10.44□□□□□ -0.74
COL6A3-204ENST00000392003 BFSP1Q12934 665 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 HLTFQ14527 1009 aaKnown RBP eCLIP10.44□□□□□ -0.74
COL6A3-204ENST00000392003 INTS8Q75QN2 995 aaKnown RBP10.44□□□□□ -0.74
COL6A3-204ENST00000392003 TPCN2Q8NHX9 752 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 INPP4AQ96PE3 977 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-204ENST00000392003 TBC1D22BQ9NU19 505 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 ATAD5Q96QE3 1844 aa10.44□□□□□ -0.74
COL6A3-204ENST00000392003 RFX1P22670 979 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 MTMR1Q13613 665 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 DPY19L2P1Q6NXN4 242 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 LRRC31Q6UY01 552 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 RIN2Q8WYP3 895 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-204ENST00000392003 IKZF4Q9H2S9 585 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 DMAC2Q9NW81 257 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 TMOD4Q9NZQ9 345 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 APEX2Q9UBZ4 518 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 F8VZ95 297 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 DDX3XO00571 662 aaKnown RBP eCLIP10.43□□□□□ -0.74
COL6A3-204ENST00000392003 NFIBO00712 420 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 ITGB5P18084 799 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms