RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 NT5C2P49902 561 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 QRICH1Q2TAL8 776 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 TRPM8Q7Z2W7 1104 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 USP40Q9NVE5 1235 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 TRPC6Q9Y210 931 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 PITPNM2Q9BZ72 1349 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 ATMINO43313 823 aaPredicted RBP19.95■□□□□ 0.78
CCDC3-201ENST00000378825 FERP16591 822 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 NAA25Q14CX7 972 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 CERS5Q8N5B7 392 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 RDH13Q8NBN7 331 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 BANK1Q8NDB2 785 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 CENPTQ96BT3 561 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 BORCS6Q96GS4 357 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 TYW1Q9NV66 732 aaKnown RBP19.95■□□□□ 0.78
CCDC3-201ENST00000378825 DNM3Q9UQ16 869 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 PCDHA1Q9Y5I3 950 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 KIF13BQ9NQT8 1826 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 FAM86B1E9PN63 330 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 CALUO43852 315 aaPredicted RBP19.95■□□□□ 0.78
CCDC3-201ENST00000378825 FAM86B2P0C5J1 330 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 GCFC2P16383 781 aaKnown RBP19.95■□□□□ 0.78
CCDC3-201ENST00000378825 GBP2P32456 591 aaPredicted RBP19.95■□□□□ 0.78
CCDC3-201ENST00000378825 RPAINQ86UA6 219 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 SYT2Q8N9I0 419 aaPredicted RBP19.95■□□□□ 0.78
CCDC3-201ENST00000378825 ETNPPLQ8TBG4 499 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 NSMCE1Q8WV22 266 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 PGM2Q96G03 612 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 SYT11Q9BT88 431 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 DDX23Q9BUQ8 820 aaKnown RBP19.95■□□□□ 0.78
CCDC3-201ENST00000378825 TTC7AQ9ULT0 858 aaPredicted RBP19.95■□□□□ 0.78
CCDC3-201ENST00000378825 TRIM33Q9UPN9 1127 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 ALG6Q9Y672 507 aa19.95■□□□□ 0.78
CCDC3-201ENST00000378825 ZMYM2Q9UBW7 1377 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 IGKV6D-41A0A0C4DH26 115 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 TULP1O00294 542 aaPredicted RBP19.94■□□□□ 0.78
CCDC3-201ENST00000378825 TTLL1O95922 423 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 TMEM253P0C7T8 217 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 NPEPPSP55786 919 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 GABPAQ06546 454 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 ANKS4BQ8N8V4 417 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 AGAP11Q8TF27 550 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 SLC24A3Q9HC58 644 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 DNAJC17Q9NVM6 304 aaKnown RBP19.94■□□□□ 0.78
CCDC3-201ENST00000378825 NCANO14594 1321 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 EML1O00423 815 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 BBOX1O75936 387 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 CYP2J2P51589 502 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 LONRF1Q17RB8 773 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 CCDC50Q8IVM0 306 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 FAM186BQ8IYM0 893 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 MAGEC3Q8TD91 643 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 BTBD6Q96KE9 485 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 CARD9Q9H257 536 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 ATP6V0A4Q9HBG4 840 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 ACP6Q9NPH0 428 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 FGFR1OP2Q9NVK5 253 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 GAKO14976 1311 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 MYO3BQ8WXR4 1341 aa19.94■□□□□ 0.78
CCDC3-201ENST00000378825 FAXDC2Q96IV6 333 aa19.93■□□□□ 0.78
CCDC3-201ENST00000378825 SAMD15Q9P1V8 674 aa19.93■□□□□ 0.78
CCDC3-201ENST00000378825 CTNNAL1Q9UBT7 734 aa19.93■□□□□ 0.78
CCDC3-201ENST00000378825 PNMA3Q9UL41 463 aa19.93■□□□□ 0.78
CCDC3-201ENST00000378825 INTUQ9ULD6 942 aa19.93■□□□□ 0.78
CCDC3-201ENST00000378825 MEIS2O14770 477 aa19.93■□□□□ 0.78
CCDC3-201ENST00000378825 ASAP2O43150 1006 aa19.93■□□□□ 0.78
CCDC3-201ENST00000378825 ARHGAP4P98171 946 aa19.93■□□□□ 0.78
CCDC3-201ENST00000378825 AUHQ13825 339 aaKnown RBP19.93■□□□□ 0.78
CCDC3-201ENST00000378825 SPICE1Q8N0Z3 855 aa19.93■□□□□ 0.78
CCDC3-201ENST00000378825 LENG9Q96B70 501 aa19.93■□□□□ 0.78
CCDC3-201ENST00000378825 CRAMP1Q96RY5 1269 aa19.93■□□□□ 0.78
CCDC3-201ENST00000378825 AFF2P51816 1311 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 CCDC169A6NNP5 214 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 FOXN3O00409 490 aaPredicted RBP19.92■□□□□ 0.78
CCDC3-201ENST00000378825 HOXA7P31268 230 aaPredicted RBP19.92■□□□□ 0.78
CCDC3-201ENST00000378825 SLC8A1P32418 973 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 ADCY1Q08828 1119 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 CNGA2Q16280 664 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 USH1GQ495M9 461 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 TAX1BP1Q86VP1 789 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 FAM163AQ96GL9 167 aaPredicted RBP19.92■□□□□ 0.78
CCDC3-201ENST00000378825 PCDHA3Q9Y5H8 950 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 GOLGA6L10A0A0M3HER8 536 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 POLRMTO00411 1230 aaKnown RBP19.92■□□□□ 0.78
CCDC3-201ENST00000378825 PPEF1O14829 653 aaPredicted RBP19.92■□□□□ 0.78
CCDC3-201ENST00000378825 RARAP10276 462 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 FMO5P49326 533 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 ALDH5A1P51649 535 aaPredicted RBP19.92■□□□□ 0.78
CCDC3-201ENST00000378825 CACNB3P54284 484 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 NCALDP61601 193 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 CTTNQ14247 550 aaKnown RBP19.92■□□□□ 0.78
CCDC3-201ENST00000378825 PHLDB3Q6NSJ2 640 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 EXOC3L1Q86VI1 746 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 TBC1D22AQ8WUA7 517 aa19.92■□□□□ 0.78
CCDC3-201ENST00000378825 EIF4E1BA6NMX2 242 aaKnown RBP19.91■□□□□ 0.78
CCDC3-201ENST00000378825 RIPK2O43353 540 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 ANP32DO95626 131 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 GH1P01241 217 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 ADRA2BP18089 450 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 RPA1P27694 616 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms