RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 CCNYQ8ND76 341 aa16.09■□□□□ 0.17
NPHP4-201ENST00000378156 TOPORSQ9NS56 1045 aaPredicted RBP16.09■□□□□ 0.17
NPHP4-201ENST00000378156 DNAJC17Q9NVM6 304 aaKnown RBP16.09■□□□□ 0.17
NPHP4-201ENST00000378156 ADAM22Q9P0K1 906 aa16.09■□□□□ 0.17
NPHP4-201ENST00000378156 PRR12Q9ULL5 1215 aa16.09■□□□□ 0.17
NPHP4-201ENST00000378156 SCINQ9Y6U3 715 aa16.09■□□□□ 0.17
NPHP4-201ENST00000378156 PRPSAP2O60256 369 aa16.09■□□□□ 0.17
NPHP4-201ENST00000378156 ZNF568Q3ZCX4 644 aa16.09■□□□□ 0.17
NPHP4-201ENST00000378156 TEX13BQ9BXU2 312 aa16.09■□□□□ 0.17
NPHP4-201ENST00000378156 VCPKMTQ9H867 229 aa16.09■□□□□ 0.17
NPHP4-201ENST00000378156 PFDN1O60925 122 aa16.08■□□□□ 0.17
NPHP4-201ENST00000378156 RWDD2BP57060 319 aa16.08■□□□□ 0.17
NPHP4-201ENST00000378156 NOA1Q8NC60 698 aaKnown RBP16.08■□□□□ 0.17
NPHP4-201ENST00000378156 AFG3L2Q9Y4W6 797 aa16.08■□□□□ 0.17
NPHP4-201ENST00000378156 TTC36A6NLP5 189 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 ADGRA1Q86SQ6 560 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 SIX6OS1Q8N1H7 587 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 KCTD6Q8NC69 237 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 TMEM35BQ8NCS4 154 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 RBM46Q8TBY0 533 aaKnown RBP16.08■□□□□ 0.16
NPHP4-201ENST00000378156 ZMYND12Q9H0C1 365 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 ANAPC5Q9UJX4 755 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 PPFIA2O75334 1257 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 TRIM49P0CI25 452 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 TRIM49CP0CI26 452 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 COPB2P35606 906 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 ZNF211Q13398 564 aaPredicted RBP16.08■□□□□ 0.16
NPHP4-201ENST00000378156 FASTKD5Q7L8L6 764 aaKnown RBP16.08■□□□□ 0.16
NPHP4-201ENST00000378156 HAUS6Q7Z4H7 955 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 OR6B3Q8NGW1 331 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 TUFT1Q9NNX1 390 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 TBK1Q9UHD2 729 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 GNAT1P11488 350 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 TNFAIP2Q03169 654 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 DRAP1Q14919 205 aaPredicted RBP16.08■□□□□ 0.16
NPHP4-201ENST00000378156 KIAA1841Q6NSI8 718 aa16.08■□□□□ 0.16
NPHP4-201ENST00000378156 INHBAP08476 426 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 MAGEA9P43362 315 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 SLMAPQ14BN4 828 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 KLHL29Q96CT2 875 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 IQCA1LA6NCM1 817 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 PSMD14O00487 310 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 RASGRF2O14827 1237 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 GLYCTKQ8IVS8 523 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 MMP19Q99542 508 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 TUBB6Q9BUF5 446 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 C2orf40Q9H1Z8 148 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 SLC9A2Q9UBY0 812 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 CNOT8Q9UFF9 292 aaKnown RBP16.07■□□□□ 0.16
NPHP4-201ENST00000378156 MYL3P08590 195 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 GYS1P13807 737 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 SESN3P58005 492 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 SEC23AQ15436 765 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 DSTYKQ6XUX3 929 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 MS4A14Q96JA4 679 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 SMARCA1P28370 1054 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 BAATQ14032 418 aaPredicted RBP16.07■□□□□ 0.16
NPHP4-201ENST00000378156 R3HDM1Q15032 1099 aaKnown RBP16.07■□□□□ 0.16
NPHP4-201ENST00000378156 ZNF746Q6NUN9 644 aaPredicted RBP16.07■□□□□ 0.16
NPHP4-201ENST00000378156 RHPN2Q8IUC4 686 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 FBXL16Q8N461 479 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 EDEM3Q9BZQ6 932 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 SMARCAL1Q9NZC9 954 aa16.07■□□□□ 0.16
NPHP4-201ENST00000378156 TCRBV5S4A2TA0A5A2 114 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 TBX3O15119 743 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 DNAJC8O75937 253 aaPredicted RBP16.06■□□□□ 0.16
NPHP4-201ENST00000378156 PRPSAP1Q14558 356 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 KRT39Q6A163 491 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 MMS22LQ6ZRQ5 1243 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 FBXO41Q8TF61 875 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 POLR3FQ9H1D9 316 aaPredicted RBP16.06■□□□□ 0.16
NPHP4-201ENST00000378156 SALL1Q9NSC2 1324 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 C19orf81C9J6K1 198 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 RPSAP08865 295 aaKnown RBP16.06■□□□□ 0.16
NPHP4-201ENST00000378156 HDLBPQ00341 1268 aaKnown RBP16.06■□□□□ 0.16
NPHP4-201ENST00000378156 TMEM270Q6UE05 265 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 ZNF280CQ8ND82 737 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 SPATA33Q96N06 139 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 ANAPC7Q9UJX3 599 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 MST1RQ04912 1400 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 MIF4GDA9UHW6 222 aaKnown RBP16.06■□□□□ 0.16
NPHP4-201ENST00000378156 ERVK-24P63145 666 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 PDE1BQ01064 536 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 SLC15A2Q16348 729 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 BBS5Q8N3I7 341 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 SLC16A10Q8TF71 515 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 CCDC68Q9H2F9 335 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 JMJD4Q9H9V9 463 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 NGRNQ9NPE2 291 aaKnown RBP16.06■□□□□ 0.16
NPHP4-201ENST00000378156 SCOCQ9UIL1 159 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 TARSL2A2RTX5 802 aaKnown RBP16.06■□□□□ 0.16
NPHP4-201ENST00000378156 PDXKO00764 312 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 ACSL3O95573 720 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 SKIP12755 728 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 GPC5P78333 572 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 ZNF699Q32M78 642 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 DARS2Q6PI48 645 aaKnown RBP16.06■□□□□ 0.16
NPHP4-201ENST00000378156 CCHCR1Q8TD31 782 aa16.06■□□□□ 0.16
NPHP4-201ENST00000378156 RIN2Q8WYP3 895 aaPredicted RBP16.06■□□□□ 0.16
NPHP4-201ENST00000378156 SAAL1Q96ER3 474 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms