RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 HOXD13P35453 343 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 CHKAP35790 457 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 SARNPP82979 210 aaKnown RBP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 FKBP3Q00688 224 aaKnown RBP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 POU5F1Q01860 360 aaKnown RBP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 CYP4A11Q02928 519 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 KLRC3Q07444 240 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 PABPC4Q13310 644 aaKnown RBP eCLIP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 CNGA2Q16280 664 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 C2CD6Q53TS8 623 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 RNF220Q5VTB9 566 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 CDCA2Q69YH5 1023 aaPredicted RBP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 DPY19L2P1Q6NXN4 242 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ZNF449Q6P9G9 518 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ISLR2Q6UXK2 745 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 LRIG3Q6UXM1 1119 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 BARGINQ6ZT62 677 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 PIGWQ7Z7B1 504 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 EXOC3L1Q86VI1 746 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 GPBP1Q86WP2 473 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 TRIM59Q8IWR1 403 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 GUF1Q8N442 669 aaKnown RBP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 UCMAQ8WVF2 138 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ATG4AQ8WYN0 398 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 HAS1Q92839 578 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 TSPAN18Q96SJ8 248 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 BRIP1Q9BX63 1249 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 KDM4CQ9H3R0 1056 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 HDAC9Q9UKV0 1011 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 UTP11Q9Y3A2 253 aaKnown RBP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 NUMBLQ9Y6R0 609 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 EP400Q96L91 3159 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 KLHL33A6NCF5 533 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 TISP43B9A030 160 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 USP17L15C9J2P7 530 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 USP17L13C9JLJ4 530 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 USP17L11C9JVI0 530 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 USP17L18D6R9N7 530 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 USP17L22D6RA61 530 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 USP17L17D6RBQ6 530 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 USP17L19D6RCP7 530 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 USP17L20D6RJB6 530 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 MARCH6O60337 910 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 SNX3O60493 162 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 PPP1R11O60927 126 aaPredicted RBP5.85□□□□□ -1.47
ATG4A-204ENST00000372246 TRIM49P0CI25 452 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 TRIM49CP0CI26 452 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 CHRNB2P17787 502 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 ATF3P18847 181 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 SLC8A1P32418 973 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 KIF5BP33176 963 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 RCAN1P53805 252 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 USP17L24Q0WX57 530 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 BIRC3Q13489 604 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 CUL1Q13616 776 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 AUHQ13825 339 aaKnown RBP5.85□□□□□ -1.47
ATG4A-204ENST00000372246 CTTNQ14247 550 aaKnown RBP5.85□□□□□ -1.47
ATG4A-204ENST00000372246 GRM4Q14833 912 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 TAF11Q15544 211 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 C11orf91Q3C1V1 193 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 ZC2HC1CQ53FD0 456 aaPredicted RBP5.85□□□□□ -1.47
ATG4A-204ENST00000372246 DENND2CQ68D51 928 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 LLGL2Q6P1M3 1020 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 USP17L6PQ6QN14 398 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 NSMFQ6X4W1 530 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 JAMLQ86YT9 394 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 OLIG1Q8TAK6 271 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 ZC3H15Q8WU90 426 aaKnown RBP5.85□□□□□ -1.47
ATG4A-204ENST00000372246 SLC20A1Q8WUM9 679 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 MTMR9Q96QG7 549 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 OSBPL1AQ9BXW6 950 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 SLCO1B3Q9NPD5 702 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 GRHL1Q9NZI5 618 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 SAMD15Q9P1V8 674 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 HAO1Q9UJM8 370 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 MINPP1Q9UNW1 487 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 MYH4Q9Y623 1939 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 PARP4Q9UKK3 1724 aaKnown RBP5.85□□□□□ -1.47
ATG4A-204ENST00000372246 TMEM120BA0PK00 339 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 KIAA0391O15091 583 aaKnown RBP5.85□□□□□ -1.47
ATG4A-204ENST00000372246 DDX3YO15523 660 aaKnown RBP5.85□□□□□ -1.47
ATG4A-204ENST00000372246 TLL1O43897 1013 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 ENTPD5O75356 428 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 SPAG7O75391 227 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 ADAMTS2O95450 1211 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 CBX6O95503 412 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 KRT18P05783 430 aaKnown RBP5.85□□□□□ -1.47
ATG4A-204ENST00000372246 PAEPP09466 180 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 MMP13P45452 471 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 AMPD3Q01432 767 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 DRP2Q13474 957 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 ARSHQ5FYA8 562 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 AGBL2Q5U5Z8 902 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 DNAJC14Q6Y2X3 702 aaPredicted RBP5.85□□□□□ -1.47
ATG4A-204ENST00000372246 KIAA0825Q8IV33 1275 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 REXO1Q8N1G1 1221 aaKnown RBP5.85□□□□□ -1.47
ATG4A-204ENST00000372246 ARMC2Q8NEN0 867 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 ACTRT1Q8TDG2 376 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 C1orf54Q8WWF1 131 aa5.85□□□□□ -1.47
ATG4A-204ENST00000372246 CEP95Q96GE4 821 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms