RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 UBE4BO95155 1302 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 DEAF1O75398 565 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 IMPDH2P12268 514 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 OSTNP61366 133 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 FOXP3Q9BZS1 431 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 ATP11BQ9Y2G3 1177 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 PRPF3O43395 683 aaKnown RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 MAGOHP61326 146 aaKnown RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 KLHL8Q9P2G9 620 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 DCTN4Q9UJW0 460 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 KRT87PA6NCN2 255 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 C7orf31Q8N865 590 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 PPHLN1Q8NEY8 458 aaKnown RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 SNF8Q96H20 258 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 CEP170P1Q96L14 293 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 MAGEB5Q9BZ81 275 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 KDM4CQ9H3R0 1056 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 LZTS1Q9Y250 596 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 CDC42BPBQ9Y5S2 1711 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 MRPS35P82673 323 aaKnown RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 CUL3Q13618 768 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 TTC30AQ86WT1 665 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 CYGBQ8WWM9 190 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 GCOM2Q9BZD3 368 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 MEFVO15553 781 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 PCCAP05165 728 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 CYP2C19P33261 490 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 TBC1D23Q9NUY8 699 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 PRKAG2Q9UGJ0 569 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 HNRNPRO43390 633 aaKnown RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 ORC4O43929 436 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 PHF21AQ96BD5 680 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 MED21Q13503 144 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 CCDC142Q17RM4 750 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 ULK4Q96C45 1275 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 CYP4F11Q9HBI6 524 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 QRICH2Q9H0J4 1663 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 H0Y626 953 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 TRIM16O95361 564 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 ALKBH5Q6P6C2 394 aaKnown RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 SULF1Q8IWU6 871 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 TBCKQ8TEA7 893 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 SH2B2O14492 632 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 TBC1D4O60343 1298 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 GSNP06396 782 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 IL10P22301 178 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 CCND1P24385 295 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 RECQLP46063 649 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 RAD23BP54727 409 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 RPS8P62241 208 aaKnown RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 INPP5AQ14642 412 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 KIAA0825Q8IV33 1275 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 MB21D1Q8N884 522 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 ZBTB38Q8NAP3 1195 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 FAM167BQ9BTA0 163 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 KLC1Q07866 573 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 PAGE5Q96GU1 130 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 EGFL8Q99944 293 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 C10orf88Q9H8K7 445 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 SARS2Q9NP81 518 aaKnown RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 A0A1W2PQC6 194 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 CCDC78A2IDD5 438 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 KHDRBS2Q5VWX1 349 aaKnown RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 RASGRP4Q8TDF6 673 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 PDCD6IPQ8WUM4 868 aaKnown RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 ARHGEF1Q92888 912 aaKnown RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 ARL2BPQ9Y2Y0 163 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 ZBTB12Q9Y330 459 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 ANGPT2O15123 496 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 CTIFO43310 598 aaKnown RBP7.76□□□□□ -1.17
SYNE1-208ENST00000367256 ROR1Q01973 937 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 STXBP2Q15833 593 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 ERICH1Q86X53 443 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 ZNF280CQ8ND82 737 aa7.76□□□□□ -1.17
SYNE1-208ENST00000367256 XDHP47989 1333 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 F5H423 210 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-208ENST00000367256 H0YC42 278 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 PPEF1O14829 653 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-208ENST00000367256 MYBL1P10243 752 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 ANO4Q32M45 955 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 CEP78Q5JTW2 689 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 RINLQ6ZS11 566 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 ALDH8A1Q9H2A2 487 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-208ENST00000367256 SEPT3Q9UH03 358 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 SMG5Q9UPR3 1016 aaKnown RBP7.75□□□□□ -1.17
SYNE1-208ENST00000367256 PRG3Q9Y2Y8 225 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-208ENST00000367256 OSBPP22059 807 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 TBL3Q12788 808 aaKnown RBP7.75□□□□□ -1.17
SYNE1-208ENST00000367256 GPS1Q13098 491 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 POTEAQ6S8J7 498 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 EDC3Q96F86 508 aaKnown RBP7.75□□□□□ -1.17
SYNE1-208ENST00000367256 ANAPC7Q9UJX3 599 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 TBX22Q9Y458 520 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 TET3O43151 1660 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 NBNO60934 754 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 CYP27A1Q02318 531 aa7.75□□□□□ -1.17
SYNE1-208ENST00000367256 ZNF699Q32M78 642 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms