RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 H0YCG3 227 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 ADAMTS4O75173 837 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 PTMAP06454 111 aaKnown RBP20.41■□□□□ 0.86
CLN3-206ENST00000360019 SMIM10L2AP0DMW4 78 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 SMIM10L2BP0DMW5 78 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 PBX1P40424 430 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 PSEN2P49810 448 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 CHMP4BP1P59074 171 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 ARHGEF6Q15052 776 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 LMBR1Q8WVP7 490 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 EXOC7Q9UPT5 735 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 LGALS16A8MUM7 142 aa20.4■□□□□ 0.86
CLN3-206ENST00000360019 DNM2P50570 870 aa20.4■□□□□ 0.86
CLN3-206ENST00000360019 CCDC40Q4G0X9 1142 aa20.4■□□□□ 0.86
CLN3-206ENST00000360019 GNASQ5JWF2 1037 aa20.4■□□□□ 0.86
CLN3-206ENST00000360019 RHPN2Q8IUC4 686 aa20.4■□□□□ 0.86
CLN3-206ENST00000360019 SLC9A9Q8IVB4 645 aa20.4■□□□□ 0.86
CLN3-206ENST00000360019 C12orf56Q8IXR9 622 aa20.4■□□□□ 0.86
CLN3-206ENST00000360019 TMEM174Q8WUU8 243 aa20.4■□□□□ 0.86
CLN3-206ENST00000360019 BEGAINQ9BUH8 593 aa20.4■□□□□ 0.86
CLN3-206ENST00000360019 NOC4LQ9BVI4 516 aaKnown RBP20.4■□□□□ 0.86
CLN3-206ENST00000360019 XPNPEP3Q9NQH7 507 aa20.4■□□□□ 0.86
CLN3-206ENST00000360019 SIP14410 1827 aa20.4■□□□□ 0.86
CLN3-206ENST00000360019 ANKRD63C9JTQ0 380 aa20.39■□□□□ 0.86
CLN3-206ENST00000360019 SRGAP2CP0DJJ0 459 aa20.39■□□□□ 0.86
CLN3-206ENST00000360019 ABCD1P33897 745 aa20.39■□□□□ 0.86
CLN3-206ENST00000360019 PRMT2P55345 433 aa20.39■□□□□ 0.86
CLN3-206ENST00000360019 MAN2A1Q16706 1144 aa20.39■□□□□ 0.86
CLN3-206ENST00000360019 CEP135Q66GS9 1140 aa20.39■□□□□ 0.86
CLN3-206ENST00000360019 CDCA2Q69YH5 1023 aaPredicted RBP20.39■□□□□ 0.86
CLN3-206ENST00000360019 SLC39A4Q6P5W5 647 aa20.39■□□□□ 0.86
CLN3-206ENST00000360019 TRIM59Q8IWR1 403 aa20.39■□□□□ 0.86
CLN3-206ENST00000360019 RNF149Q8NC42 400 aa20.39■□□□□ 0.86
CLN3-206ENST00000360019 CBWD1Q9BRT8 395 aa20.39■□□□□ 0.86
CLN3-206ENST00000360019 CGNQ9P2M7 1197 aaKnown RBP20.39■□□□□ 0.86
CLN3-206ENST00000360019 TRIM17Q9Y577 477 aa20.39■□□□□ 0.86
CLN3-206ENST00000360019 NRCAMQ92823 1304 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 RRN3P2A6NIE6 340 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 SLC16A3O15427 465 aaKnown RBP20.39■□□□□ 0.85
CLN3-206ENST00000360019 INHAP05111 366 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 SCP2P22307 547 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 ADSSP30520 456 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 CYP2J2P51589 502 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 C1QTNF8P60827 252 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 SNRPFP62306 86 aaKnown RBP20.39■□□□□ 0.85
CLN3-206ENST00000360019 HIC1Q14526 733 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 SLAIN1Q8ND83 568 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 KATNAL1Q9BW62 490 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 SPC25Q9HBM1 224 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 PTCH2Q9Y6C5 1203 aa20.39■□□□□ 0.85
CLN3-206ENST00000360019 KAT6AQ92794 2004 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 GOLGA6L6A8MZA4 724 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 EDN1P05305 212 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 MYBPC2Q14324 1141 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 VWA3BQ502W6 1294 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 CCDC186Q7Z3E2 898 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 FRMD5Q7Z6J6 570 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 ZNF668Q96K58 619 aaPredicted RBP20.38■□□□□ 0.85
CLN3-206ENST00000360019 PCIF1Q9H4Z3 704 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 TMEM134Q9H6X4 195 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 WBP1LQ9NX94 342 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 DDX20Q9UHI6 824 aaKnown RBP20.38■□□□□ 0.85
CLN3-206ENST00000360019 USP20Q9Y2K6 914 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 PHLPP2Q6ZVD8 1323 aa20.38■□□□□ 0.85
CLN3-206ENST00000360019 K7ERI5 159 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 PES1O00541 588 aaKnown RBP20.37■□□□□ 0.85
CLN3-206ENST00000360019 HNRNPDLO14979 420 aaKnown RBP20.37■□□□□ 0.85
CLN3-206ENST00000360019 KPNA6O60684 536 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 EPB41P11171 864 aaKnown RBP20.37■□□□□ 0.85
CLN3-206ENST00000360019 UBXN1Q04323 297 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 STRN3Q13033 797 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 SPECC1LQ69YQ0 1117 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 ARMCX5Q6P1M9 558 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 NFRKBQ6P4R8 1299 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 CXCL17Q6UXB2 119 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 TRIM44Q96DX7 344 aaPredicted RBP20.37■□□□□ 0.85
CLN3-206ENST00000360019 BORCS6Q96GS4 357 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 NLRP4Q96MN2 994 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 MTG1Q9BT17 334 aaPredicted RBP20.37■□□□□ 0.85
CLN3-206ENST00000360019 CCDC113Q9H0I3 377 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 NDST4Q9H3R1 872 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 IMPACTQ9P2X3 320 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 MBLAC1A4D2B0 266 aaPredicted RBP20.37■□□□□ 0.85
CLN3-206ENST00000360019 ASAP2O43150 1006 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 VTNP04004 478 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 TPM2P07951 284 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 TMOD1P28289 359 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 GRK4P32298 578 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 PSMC2P35998 433 aaKnown RBP20.37■□□□□ 0.85
CLN3-206ENST00000360019 ADAM17P78536 824 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 ZSWIM2Q8NEG5 633 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 KLHDC9Q8NEP7 349 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 MKNK1Q9BUB5 465 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 HSPBP1Q9NZL4 362 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 ARMCX3Q9UH62 379 aaPredicted RBP20.37■□□□□ 0.85
CLN3-206ENST00000360019 AKT3Q9Y243 479 aa20.37■□□□□ 0.85
CLN3-206ENST00000360019 SCN10AQ9Y5Y9 1956 aa20.36■□□□□ 0.85
CLN3-206ENST00000360019 EXOC3O60645 756 aa20.36■□□□□ 0.85
CLN3-206ENST00000360019 PIGRP01833 764 aa20.36■□□□□ 0.85
CLN3-206ENST00000360019 EFNA5P52803 228 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms