RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 ZC3H4Q9UPT8 1303 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 TADA3O75528 432 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 CIAO1O76071 339 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 HDAC4P56524 1084 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 LRRC74AQ0VAA2 488 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 AP1B1Q10567 949 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 RGS9BPQ6ZS82 235 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 MB21D1Q8N884 522 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 GPT2Q8TD30 523 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 THOC1Q96FV9 657 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 DDX50Q9BQ39 737 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 DHX36Q9H2U1 1008 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 MRPL40Q9NQ50 206 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 ADA2Q9NZK5 511 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 PYCARDQ9ULZ3 195 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 DFFAO00273 331 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 ZMYND10O75800 440 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 LDHAP00338 332 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 PSMA3P25788 255 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 ADORA1P30542 326 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 PPP3CCP48454 512 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 ANKRD40Q6AI12 368 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 RINLQ6ZS11 566 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 TOGARAM2Q6ZUX3 1019 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 FAM160B2Q86V87 743 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 ZNF507Q8TCN5 953 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 PBKQ96KB5 322 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 TRIM62Q9BVG3 475 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 IKBKBO14920 756 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 MAPK13O15264 365 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 GCFC2P16383 781 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 HOXA13P31271 388 aaPredicted RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 GPC3P51654 580 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 ETF1P62495 437 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 ZNF235Q14590 738 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 MAN2A1Q16706 1144 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 UBE2SQ16763 222 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 TDRD7Q8NHU6 1098 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 CAB39Q9Y376 341 aaPredicted RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 CMA1P23946 247 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 SMARCA1P28370 1054 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 CXCR5P32302 372 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 PEX3P56589 373 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 GRAPQ13588 217 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 ZNF699Q32M78 642 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 SDE2Q6IQ49 451 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 GRAPLQ8TC17 118 aaPredicted RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 DHTKD1Q96HY7 919 aaPredicted RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 BTBD6Q96KE9 485 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 PUS3Q9BZE2 481 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 MAP3K20Q9NYL2 800 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 CLIC4Q9Y696 253 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 QRICH2Q9H0J4 1663 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 ADORA2BP29275 332 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 ARL4CP56559 192 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 MFSD4BQ5TF39 518 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 RAET1EQ8TD07 263 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 CNOT10Q9H9A5 744 aaKnown RBP10.82□□□□□ -0.68
CLIP1-202ENST00000358808 ATP6V0A4Q9HBG4 840 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 PALLDQ8WX93 1383 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 ABCC12Q96J65 1359 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 ACSL3O95573 720 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 TBL3Q12788 808 aaKnown RBP10.82□□□□□ -0.68
CLIP1-202ENST00000358808 ZNF568Q3ZCX4 644 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 DEPDC1Q5TB30 811 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 KRT39Q6A163 491 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 SLC35F6Q8N357 371 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 VMP1Q96GC9 406 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 GJD4Q96KN9 370 aaPredicted RBP10.82□□□□□ -0.68
CLIP1-202ENST00000358808 ZBTB7AO95365 584 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 DYNLL1P63167 89 aaKnown RBP10.82□□□□□ -0.68
CLIP1-202ENST00000358808 SMAD1Q15797 465 aaKnown RBP10.82□□□□□ -0.68
CLIP1-202ENST00000358808 CDC37Q16543 378 aaPredicted RBP10.82□□□□□ -0.68
CLIP1-202ENST00000358808 AK8Q96MA6 479 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 FOPNLQ96NB1 174 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 USP28Q96RU2 1077 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 AP1M1Q9BXS5 423 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 ZMYND12Q9H0C1 365 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 TRPM1Q7Z4N2 1603 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 ERBB3P21860 1342 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 SPATA31D1Q6ZQQ2 1576 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 A0A0D9SFI3 127 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 POTEB3A0JP26 581 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 M0QYV0 167 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 WDR47O94967 919 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 HDLBPQ00341 1268 aaKnown RBP10.82□□□□□ -0.68
CLIP1-202ENST00000358808 NR5A1Q13285 461 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 UBE3CQ15386 1083 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 POTEBQ6S5H4 581 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 PASD1Q8IV76 773 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 DYDC2Q96IM9 177 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 FAM129AQ9BZQ8 928 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 EMILIN3Q9NT22 766 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 PI4KBQ9UBF8 816 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 PCDHB8Q9UN66 801 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 FRMPD1Q5SYB0 1578 aa10.82□□□□□ -0.68
CLIP1-202ENST00000358808 GOLGA8MH3BSY2 632 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 NDUFB5O43674 189 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 RWDD2BP57060 319 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 ALCAMQ13740 583 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms