RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CCDC15Q0P6D6 951 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 RRP1BQ14684 758 aaKnown RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 LBRQ14739 615 aaKnown RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 PPP2R5EQ16537 467 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 PARP6Q2NL67 630 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 EDRF1Q3B7T1 1238 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 TBC1D25Q3MII6 688 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 HERC4Q5GLZ8 1057 aaPredicted RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 C12orf60Q5U649 245 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 RNF220Q5VTB9 566 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 FOXB2Q5VYV0 432 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 MTHFD1LQ6UB35 978 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 SEPT14Q6ZU15 432 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 CCDC25Q86WR0 208 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 PALB2Q86YC2 1186 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 TTC8Q8TAM2 541 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 PIGOQ8TEQ8 1089 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 KRT35Q92764 455 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 ART4Q93070 314 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 IFT43Q96FT9 208 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 PIGSQ96S52 555 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 SYT11Q9BT88 431 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 LRRC27Q9C0I9 530 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 CDC42EP4Q9H3Q1 356 aaKnown RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 VAT1LQ9HCJ6 419 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS39-202ENST00000348544 TAS2R14Q9NYV8 317 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 ARMCX3Q9UH62 379 aaPredicted RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 PCYOX1Q9UHG3 505 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 RASAL2Q9UJF2 1139 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 STX8Q9UNK0 236 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 DIS3Q9Y2L1 958 aaKnown RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 TAF1P21675 1872 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 H0Y3Z8 333 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 CETN3O15182 167 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 AKAP3O75969 853 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 ACSL3O95573 720 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 TMEM253P0C7T8 217 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 CTNNA2P26232 953 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 TARSP26639 723 aaKnown RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 FOXN2P32314 431 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 GBP1P32455 592 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 RFC5P40937 340 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 PTDSS1P48651 473 aaKnown RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 TNIP1Q15025 636 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 MTFR1Q15390 333 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 DCAF17Q5H9S7 520 aaPredicted RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 ARMC3Q5W041 872 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 OR52E8Q6IFG1 317 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 TMEM154Q6P9G4 183 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 USP17L2Q6R6M4 530 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 CYP4X1Q8N118 509 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 ENDOVQ8N8Q3 282 aaKnown RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 DRAXINQ8NBI3 349 aaPredicted RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 FBF1Q8TES7 1133 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 ZFAND2BQ8WV99 257 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 UCMAQ8WVF2 138 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 HAS1Q92839 578 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 FAM136AQ96C01 138 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 BORCS6Q96GS4 357 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 RAB3IPQ96QF0 476 aaPredicted RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 UIMC1Q96RL1 719 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 NAP1L3Q99457 506 aaPredicted RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 PLCD4Q9BRC7 762 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 TRIM7Q9C029 511 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 KCNK9Q9NPC2 374 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 BSDC1Q9NW68 430 aaPredicted RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 IRAK4Q9NWZ3 460 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 GCNT4Q9P109 453 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 KLHL14Q9P2G3 628 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 WDR35Q9P2L0 1181 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 MTRF1LQ9UGC7 380 aaKnown RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 KAT6BQ8WYB5 2073 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 COL5A2P05997 1499 aaPredicted RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 E7ENQ6 273 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 SMAPO00193 183 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 RNF8O76064 485 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 TSPY3P0CV98 308 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 TSPY8P0CW00 308 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 T-ENOLP0DO92 83 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 CETPP11597 493 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 ACADSP16219 412 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 CYP11B2P19099 503 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 TAC1P20366 129 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 ALDH3A1P30838 453 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 CHRNA3P32297 505 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 CASP4P49662 377 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 ACVR2BQ13705 512 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 ARSHQ5FYA8 562 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 FAM47EQ6ZV65 393 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 FRMD5Q7Z6J6 570 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 VPS36Q86VN1 386 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 GPBP1Q86WP2 473 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 LMNTD2Q8IXW0 634 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS39-202ENST00000348544 ITFG2Q969R8 447 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 SLC35C1Q96A29 364 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 SLC7A6OSQ96CW6 309 aaPredicted RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 NUDCD1Q96RS6 583 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 POP1Q99575 1024 aaKnown RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms