RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 FOXR1Q6PIV2 292 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 C12orf56Q8IXR9 622 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 SLC20A1Q8WUM9 679 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 TMEM174Q8WUU8 243 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 ZIM3Q96PE6 472 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 TRERF1Q96PN7 1200 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 UBE2TQ9NPD8 197 aaPredicted RBP16.76■□□□□ 0.27
UPF3B-202ENST00000345865 NOC2LQ9Y3T9 749 aaKnown RBP16.76■□□□□ 0.27
UPF3B-202ENST00000345865 PARP14Q460N5 1801 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 WDR81Q562E7 1941 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 CTNND1O60716 968 aaKnown RBP16.75■□□□□ 0.27
UPF3B-202ENST00000345865 TMEM253P0C7T8 217 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 KRT13P13646 458 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 GUCY2FP51841 1108 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 ERVK-9P63128 1117 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 PPATQ06203 517 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 EPC2Q52LR7 807 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 INTS8Q75QN2 995 aaKnown RBP16.75■□□□□ 0.27
UPF3B-202ENST00000345865 C4orf19Q8IY42 314 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 KAT5Q92993 513 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 ARL8AQ96BM9 186 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.75■□□□□ 0.275e-7■□□□□ 11.1
UPF3B-202ENST00000345865 THAP2Q9H0W7 228 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 TELO2Q9Y4R8 837 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 GOLGA8IPA6NC78 632 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 GOLGA8JA6NMD2 632 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 ADRB2P07550 413 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 ECHS1P30084 290 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 TNNC1P63316 161 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 NNTQ13423 1086 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 NBPF12Q5TAG4 269 aaPredicted RBP16.75■□□□□ 0.27
UPF3B-202ENST00000345865 LRRC31Q6UY01 552 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 NSMFQ6X4W1 530 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 RASGEF1CQ8N431 466 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 LMBR1Q8WVP7 490 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 PIK3R5Q8WYR1 880 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 RFFLQ8WZ73 363 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 ATG4CQ96DT6 458 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 KIFC3Q9BVG8 833 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 DDX47Q9H0S4 455 aaKnown RBP16.75■□□□□ 0.27
UPF3B-202ENST00000345865 PIM2Q9P1W9 311 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 FZD1Q9UP38 647 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 COG5Q9UP83 839 aa16.75■□□□□ 0.27
UPF3B-202ENST00000345865 TESPA1A2RU30 521 aaPredicted RBP16.74■□□□□ 0.27
UPF3B-202ENST00000345865 GOLGA6CA6NDK9 693 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 PGRMC1O00264 195 aaKnown RBP16.74■□□□□ 0.27
UPF3B-202ENST00000345865 VWA5AO00534 786 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 GOLGA6DP0CG33 693 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 ADSSP30520 456 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 PAK2Q13177 524 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 TTMPQ5BVD1 217 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 DCAF12L1Q5VU92 463 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 TAF3Q5VWG9 929 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 RNF207Q6ZRF8 634 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 ANO5Q75V66 913 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 IQCKQ8N0W5 287 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 XXYLT1Q8NBI6 393 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 JDP2Q8WYK2 163 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.74■□□□□ 0.273e-19■■■■■ 242.2
UPF3B-202ENST00000345865 GOLGA6AQ9NYA3 693 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 MAP3K20Q9NYL2 800 aaKnown RBP16.74■□□□□ 0.27
UPF3B-202ENST00000345865 ANKRD63C9JTQ0 380 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 NFKBIEO00221 500 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 SART1O43290 800 aaKnown RBP16.74■□□□□ 0.27
UPF3B-202ENST00000345865 TNFAIP3P21580 790 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 NCKAP1LP55160 1127 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 SOX10P56693 466 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 ALCAMQ13740 583 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 ALS2CLQ60I27 953 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 DDX42Q86XP3 938 aaKnown RBP eCLIP16.74■□□□□ 0.27
UPF3B-202ENST00000345865 CCDC43Q96MW1 224 aaKnown RBP16.74■□□□□ 0.27
UPF3B-202ENST00000345865 AGPAT1Q99943 283 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 TMEM117Q9H0C3 514 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 TAOK3Q9H2K8 898 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 ST6GALNAC4Q9H4F1 302 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 SEPT11Q9NVA2 429 aaKnown RBP16.74■□□□□ 0.27
UPF3B-202ENST00000345865 NR2E1Q9Y466 385 aa16.74■□□□□ 0.27
UPF3B-202ENST00000345865 COL11A1P12107 1806 aaPredicted RBP16.73■□□□□ 0.27
UPF3B-202ENST00000345865 BHMG1C9JSJ3 638 aaPredicted RBP16.73■□□□□ 0.27
UPF3B-202ENST00000345865 DDX3YO15523 660 aaKnown RBP16.73■□□□□ 0.27
UPF3B-202ENST00000345865 RPS6KA5O75582 802 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 KRT14P02533 472 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 PSMC5P62195 406 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 BAATQ14032 418 aaPredicted RBP16.73■□□□□ 0.27
UPF3B-202ENST00000345865 XKR9Q5GH70 373 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 FAM102BQ5T8I3 360 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 SYCE1Q8N0S2 351 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 CTNNBL1Q8WYA6 563 aaPredicted RBP16.73■□□□□ 0.27
UPF3B-202ENST00000345865 RLFQ13129 1914 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 KIAA1217Q5T5P2 1943 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 TNFAIP1Q13829 316 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 ARHGEF16Q5VV41 709 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 LEKR1Q6ZMV7 388 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 CBWD2Q8IUF1 395 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 GOLGA6L1Q8N7Z2 621 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 TMEM161BQ8NDZ6 487 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 FAM76AQ8TAV0 307 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 BSNDQ8WZ55 320 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 CALR3Q96L12 384 aaKnown RBP16.73■□□□□ 0.27
UPF3B-202ENST00000345865 ACP6Q9NPH0 428 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms