RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 KIFC3Q9BVG8 833 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 TBC1D22BQ9NU19 505 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 GOLGA8IPA6NC78 632 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 GOLGA8JA6NMD2 632 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 CTNND1O60716 968 aaKnown RBP21.01■□□□□ 0.95
COL9A3-201ENST00000343916 LMNB1P20700 586 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 ARHGEF19Q8IW93 802 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 CASKIN2Q8WXE0 1202 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 UBE2TQ9NPD8 197 aaPredicted RBP21.01■□□□□ 0.95
COL9A3-201ENST00000343916 PXMP2Q9NR77 195 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 HSPBP1Q9NZL4 362 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 A0A0A6YYK5 440 aaPredicted RBP21■□□□□ 0.95
COL9A3-201ENST00000343916 TRIM66O15016 1216 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 GUCY2FP51841 1108 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 FAM102BQ5T8I3 360 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 ARHGEF16Q5VV41 709 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 PRAMEF18Q5VWM3 479 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 INTS8Q75QN2 995 aaKnown RBP21■□□□□ 0.95
COL9A3-201ENST00000343916 SLFN11Q7Z7L1 901 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 NT5DC3Q86UY8 548 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 GOLGA6L1Q8N7Z2 621 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 PPP1R1BQ9UD71 204 aaPredicted RBP21■□□□□ 0.95
COL9A3-201ENST00000343916 INTUQ9ULD6 942 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 BUB1BO60566 1050 aaPredicted RBP21■□□□□ 0.95
COL9A3-201ENST00000343916 XKR9Q5GH70 373 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 C1orf220Q5T0J3 134 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 MICALL2Q8IY33 904 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 SLC20A1Q8WUM9 679 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 CAVIN3Q969G5 261 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 PBKQ96KB5 322 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 CWC15Q9P013 229 aaKnown RBP21■□□□□ 0.95
COL9A3-201ENST00000343916 TCEAL9Q9UHQ7 104 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 HACL1Q9UJ83 578 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 STXBP5LQ9Y2K9 1186 aa21■□□□□ 0.95
COL9A3-201ENST00000343916 NOC2LQ9Y3T9 749 aaKnown RBP21■□□□□ 0.95
COL9A3-201ENST00000343916 VWA5AO00534 786 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 TNNC1P63316 161 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 C10orf67Q8IYJ2 551 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 ZKSCAN4Q969J2 545 aaPredicted RBP20.99■□□□□ 0.95
COL9A3-201ENST00000343916 ARHGEF26Q96DR7 871 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 THAP2Q9H0W7 228 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 NFKBIEO00221 500 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 CES2O00748 559 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 TNFAIP3P21580 790 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 SOX10P56693 466 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 GTF2BQ00403 316 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 BAATQ14032 418 aaPredicted RBP20.99■□□□□ 0.95
COL9A3-201ENST00000343916 LEKR1Q6ZMV7 388 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 CCDC125Q86Z20 511 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 C4orf19Q8IY42 314 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 XXYLT1Q8NBI6 393 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 ACTRT1Q8TDG2 376 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 KAT5Q92993 513 aa20.99■□□□□ 0.95
COL9A3-201ENST00000343916 MYO1CO00159 1063 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 ZBED4O75132 1171 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 LYPLA2O95372 231 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 ZNF280AP59817 542 aaPredicted RBP20.98■□□□□ 0.95
COL9A3-201ENST00000343916 PSMC5P62195 406 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 MYBPC2Q14324 1141 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 DALRD3Q5D0E6 543 aaKnown RBP20.98■□□□□ 0.95
COL9A3-201ENST00000343916 SCFD2Q8WU76 684 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 LMBR1Q8WVP7 490 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 CTNNBL1Q8WYA6 563 aaPredicted RBP20.98■□□□□ 0.95
COL9A3-201ENST00000343916 RFFLQ8WZ73 363 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 DDX47Q9H0S4 455 aaKnown RBP20.98■□□□□ 0.95
COL9A3-201ENST00000343916 GOLGA6CA6NDK9 693 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 CCDC169A6NNP5 214 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 PGRMC1O00264 195 aaKnown RBP20.98■□□□□ 0.95
COL9A3-201ENST00000343916 ADRB2P07550 413 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 GOLGA6DP0CG33 693 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 MAPTP10636 758 aaKnown RBP20.98■□□□□ 0.95
COL9A3-201ENST00000343916 ITGA4P13612 1032 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 PAK2Q13177 524 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.98■□□□□ 0.955e-12■■□□□ 11.4
COL9A3-201ENST00000343916 GOLGA6AQ9NYA3 693 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 SUCLA2Q9P2R7 463 aaPredicted RBP20.98■□□□□ 0.95
COL9A3-201ENST00000343916 TELO2Q9Y4R8 837 aa20.98■□□□□ 0.95
COL9A3-201ENST00000343916 ATP8B3O60423 1300 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 WDR64B1ANS9 1081 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 TMEM253P0C7T8 217 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 ALCAMQ13740 583 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 FOXR1Q6PIV2 292 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 ANO5Q75V66 913 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 SYCE1Q8N0S2 351 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 SAAL1Q96ER3 474 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 TSPYL1Q9H0U9 437 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 RNF146Q9NTX7 359 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 GJA3Q9Y6H8 435 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 ADSSP30520 456 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 USP8P40818 1118 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 GMPSP49915 693 aaPredicted RBP20.97■□□□□ 0.95
COL9A3-201ENST00000343916 SLC20A2Q08357 652 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 KIF22Q14807 665 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 CBWD2Q8IUF1 395 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 HES6Q96HZ4 224 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 ZIM3Q96PE6 472 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 ACP6Q9NPH0 428 aa20.97■□□□□ 0.95
COL9A3-201ENST00000343916 MAP3K20Q9NYL2 800 aaKnown RBP20.97■□□□□ 0.95
COL9A3-201ENST00000343916 ANKRD63C9JTQ0 380 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 SART1O43290 800 aaKnown RBP20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms