RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 NELFCDQ8IXH7 590 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 ANKRD13CQ8N6S4 541 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 CKAP2Q8WWK9 683 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 BAP1Q92560 729 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 STAMQ92783 540 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 GATA6Q92908 595 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 MAGEB18Q96M61 343 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 TUBB6Q9BUF5 446 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 DDX23Q9BUQ8 820 aaKnown RBP8.75□□□□□ -1.01
ATG4A-201ENST00000343524 SPZ1Q9BXG8 430 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 DPH5Q9H2P9 285 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 PCDH18Q9HCL0 1135 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 FAM207AQ9NSI2 230 aaPredicted RBP8.75□□□□□ -1.01
ATG4A-201ENST00000343524 ZNF212Q9UDV6 495 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 SEC63Q9UGP8 760 aaKnown RBP8.75□□□□□ -1.01
ATG4A-201ENST00000343524 MAPK8IP1Q9UQF2 711 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 ZNF148Q9UQR1 794 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 C5P01031 1676 aa8.75□□□□□ -1.01
ATG4A-201ENST00000343524 LTN1O94822 1766 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 TMEM221A6NGB7 291 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 EIF4E1BA6NMX2 242 aaKnown RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 RNMTO43148 476 aaKnown RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 ATP9BO43861 1147 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 SHBGP04278 402 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 CDK7P50613 346 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 DNA2P51530 1060 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 PMS1P54277 932 aaKnown RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 PTPN5P54829 565 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 AMPD3Q01432 767 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 AP1B1Q10567 949 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 ITGA9Q13797 1035 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 LIN52Q52LA3 116 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 THSD4Q6ZMP0 1018 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 ATG9AQ7Z3C6 839 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 ZNF554Q86TJ5 538 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 DDX42Q86XP3 938 aaKnown RBP eCLIP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 CCDC65Q8IXS2 484 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 PIP4K2CQ8TBX8 421 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 CTNNBL1Q8WYA6 563 aaPredicted RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 STMN2Q93045 179 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 MTRQ99707 1265 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 MAF1Q9H063 256 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 DDX47Q9H0S4 455 aaKnown RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 RNF41Q9H4P4 317 aaPredicted RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 TLE6Q9H808 572 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 TBCCD1Q9NVR7 557 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 WBP1LQ9NX94 342 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 SUCLA2Q9P2R7 463 aaPredicted RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 ANGPTL2Q9UKU9 493 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 PNMA3Q9UL41 463 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 INTUQ9ULD6 942 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 ZMYND8Q9ULU4 1186 aaPredicted RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 SH3GLB1Q9Y371 365 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 LY75O60449 1722 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 TJP1Q07157 1748 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 A0A0A6YYK5 440 aaPredicted RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 RBM47A0AV96 593 aaKnown RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 TLDC2A0PJX2 215 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 SIGLEC16A6NMB1 481 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 LAD1O00515 517 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 TTI1O43156 1089 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 KCNQ3O43525 872 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 KLRC4O43908 158 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 MYBL1P10243 752 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 HSPA8P11142 646 aaKnown RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 CPA3P15088 417 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 KLRC1P26715 233 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 STX2P32856 288 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 SERPINB8P50452 374 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 PTENP60484 403 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 USP46P62068 366 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 PHEXP78562 749 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 DR1Q01658 176 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 LRRC63Q05C16 580 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 SLC34A1Q06495 639 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 UBE3CQ15386 1083 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 SNX30Q5VWJ9 437 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 FOXB2Q5VYV0 432 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 HGSNATQ68CP4 663 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 LRRC74BQ6ZQY2 392 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 SEPT14Q6ZU15 432 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 MARK2Q7KZI7 788 aaKnown RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 ALDH16A1Q8IZ83 802 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 ARHGAP24Q8N264 748 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 UTP4Q969X6 686 aaKnown RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 HAUS1Q96CS2 278 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 SERPINB12Q96P63 405 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 LRRC37BQ96QE4 947 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 TGS1Q96RS0 853 aaKnown RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 ZNF184Q99676 751 aaPredicted RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 ERP44Q9BS26 406 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 MYL10Q9BUA6 226 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 CCDC113Q9H0I3 377 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 PUS7LQ9H0K6 701 aaKnown RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 EPB41L1Q9H4G0 881 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 LGR6Q9HBX8 967 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 KBTBD4Q9NVX7 518 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 DDX43Q9NXZ2 648 aaKnown RBP8.74□□□□□ -1.01
ATG4A-201ENST00000343524 PTTG2Q9NZH5 202 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 CEP126Q9P2H0 1117 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms