RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DMAC2Q9NW81 257 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 MYH11P35749 1972 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 PRKCIP41743 596 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 ZNF211Q13398 564 aaPredicted RBP11.23□□□□□ -0.61
LIMA1-201ENST00000341247 KCTD16Q68DU8 428 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 SLC35G2Q8TBE7 412 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 LPAR1Q92633 364 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 EXOC4Q96A65 974 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 TRIM31Q9BZY9 425 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 THAP2Q9H0W7 228 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 PXMP2Q9NR77 195 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 ANKRD63C9JTQ0 380 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 VWA5AO00534 786 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 ATMINO43313 823 aaPredicted RBP11.22□□□□□ -0.61
LIMA1-201ENST00000341247 PLS3P13797 630 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 MAP3K10Q02779 954 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 PPM1KQ8N3J5 372 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 USP38Q8NB14 1042 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 ACCSQ96QU6 501 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 GPR88Q9GZN0 384 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 GABBR1Q9UBS5 961 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 RPTORQ8N122 1335 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 ZC3H4Q9UPT8 1303 aaKnown RBP11.22□□□□□ -0.61
LIMA1-201ENST00000341247 CCDC66A2RUB6 948 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 BUB1BO60566 1050 aaPredicted RBP11.22□□□□□ -0.61
LIMA1-201ENST00000341247 PPP1R37O75864 691 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 ADRB2P07550 413 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 ZSCAN26Q16670 478 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 ANGEL2Q5VTE6 544 aaKnown RBP11.22□□□□□ -0.61
LIMA1-201ENST00000341247 FOXR1Q6PIV2 292 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 LRRC57Q8N9N7 239 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 NLGN2Q8NFZ4 835 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 CASKIN2Q8WXE0 1202 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 CTNNBL1Q8WYA6 563 aaPredicted RBP11.22□□□□□ -0.61
LIMA1-201ENST00000341247 RUFY1Q96T51 708 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 MKNK1Q9BUB5 465 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 CTNND1O60716 968 aaKnown RBP11.22□□□□□ -0.61
LIMA1-201ENST00000341247 DLATP10515 647 aaKnown RBP11.22□□□□□ -0.61
LIMA1-201ENST00000341247 LMBRD2Q68DH5 695 aaPredicted RBP11.22□□□□□ -0.61
LIMA1-201ENST00000341247 XXYLT1Q8NBI6 393 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 AFAP1L1Q8TED9 768 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 CEP170P1Q96L14 293 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 MED4Q9NPJ6 270 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 NOC2LQ9Y3T9 749 aaKnown RBP11.22□□□□□ -0.61
LIMA1-201ENST00000341247 RLFQ13129 1914 aa11.22□□□□□ -0.61
LIMA1-201ENST00000341247 DOCK5Q9H7D0 1870 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 NR3C2P08235 984 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 SWSAP1Q6NVH7 229 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 AADACL2Q6P093 401 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 NLRX1Q86UT6 975 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 IFT20Q8IY31 132 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 CELF4Q9BZC1 486 aaKnown RBP11.21□□□□□ -0.61
LIMA1-201ENST00000341247 CENPHQ9H3R5 247 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 PICK1Q9NRD5 415 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 KCND2Q9NZV8 630 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 PARP14Q460N5 1801 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 ZNF541Q9H0D2 1346 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 COL11A1P12107 1806 aaPredicted RBP11.21□□□□□ -0.61
LIMA1-201ENST00000341247 DENND3A2RUS2 1198 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 GTPBP10A4D1E9 387 aaKnown RBP11.21□□□□□ -0.61
LIMA1-201ENST00000341247 KRIT1O00522 736 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 KRT14P02533 472 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 BCRP11274 1271 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 EPHB4P54760 987 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 PSMC5P62195 406 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 ANO5Q75V66 913 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 ZNF572Q7Z3I7 529 aaPredicted RBP11.21□□□□□ -0.61
LIMA1-201ENST00000341247 PHLDB2Q86SQ0 1253 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 BSNDQ8WZ55 320 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 TBC1D22BQ9NU19 505 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 TMOD4Q9NZQ9 345 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 AMACRQ9UHK6 382 aa11.21□□□□□ -0.61
LIMA1-201ENST00000341247 WDR64B1ANS9 1081 aa11.21□□□□□ -0.62
LIMA1-201ENST00000341247 IFI16Q16666 785 aaKnown RBP11.21□□□□□ -0.62
LIMA1-201ENST00000341247 CYFIP1Q7L576 1253 aa11.21□□□□□ -0.62
LIMA1-201ENST00000341247 SH2D3CQ8N5H7 860 aa11.21□□□□□ -0.62
LIMA1-201ENST00000341247 GOLGA5Q8TBA6 731 aa11.21□□□□□ -0.62
LIMA1-201ENST00000341247 ARL8AQ96BM9 186 aa11.21□□□□□ -0.62
LIMA1-201ENST00000341247 VIPAS39Q9H9C1 493 aa11.21□□□□□ -0.62
LIMA1-201ENST00000341247 GOLGA6CA6NDK9 693 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 GOLGA6DP0CG33 693 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 NPTX2P47972 431 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 MXI1P50539 228 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 BACE1P56817 501 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 PPP2R5AQ15172 486 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 C10orf76Q5T2E6 689 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 LEKR1Q6ZMV7 388 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 RPUSD2Q8IZ73 545 aaKnown RBP11.2□□□□□ -0.62
LIMA1-201ENST00000341247 NEK9Q8TD19 979 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 BICD1Q96G01 975 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 PI4K2AQ9BTU6 479 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 TMEM206Q9H813 350 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 GOLGA6AQ9NYA3 693 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 CTTNBP2NLQ9P2B4 639 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 SEPT9Q9UHD8 586 aaPredicted RBP11.2□□□□□ -0.62
LIMA1-201ENST00000341247 NR2E1Q9Y466 385 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 HTTP42858 3142 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 POLR2AP24928 1970 aaKnown RBP11.2□□□□□ -0.62
LIMA1-201ENST00000341247 CYP26A1O43174 497 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 SGPL1O95470 568 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms