RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 KIF2BQ8N4N8 673 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 SLC35C1Q96A29 364 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 NUP85Q9BW27 656 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 RAB17Q9H0T7 212 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 HAUS2Q9NVX0 235 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 NXF1Q9UBU9 619 aaKnown RBP12.86□□□□□ -0.35
USP1-201ENST00000339950 CNOT8Q9UFF9 292 aaKnown RBP12.86□□□□□ -0.35
USP1-201ENST00000339950 ODF2LQ9ULJ1 636 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 MAGED2Q9UNF1 606 aaPredicted RBP12.86□□□□□ -0.35
USP1-201ENST00000339950 ZNF148Q9UQR1 794 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 DENND3A2RUS2 1198 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 MAP3K6O95382 1288 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 NUGGCQ68CJ6 796 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 PPP4R3AQ6IN85 833 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 CCDC137Q6PK04 289 aaKnown RBP12.86□□□□□ -0.35
USP1-201ENST00000339950 SRRM1Q8IYB3 904 aaKnown RBP12.86□□□□□ -0.35
USP1-201ENST00000339950 EPS8L3Q8TE67 593 aaKnown RBP12.86□□□□□ -0.35
USP1-201ENST00000339950 P2RX7Q99572 595 aaKnown RBP12.86□□□□□ -0.35
USP1-201ENST00000339950 MRPL11Q9Y3B7 192 aaKnown RBP12.86□□□□□ -0.35
USP1-201ENST00000339950 SPAG7O75391 227 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 GUCY2CP25092 1073 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 MDH1P40925 334 aaKnown RBP12.85□□□□□ -0.35
USP1-201ENST00000339950 JAG1P78504 1218 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 MCTP2Q6DN12 878 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 HAUS6Q7Z4H7 955 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 SP8Q8IXZ3 490 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 UNC45AQ9H3U1 944 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 KMT5AQ9NQR1 393 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 EP400Q96L91 3159 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 A0A1W2PQJ5 194 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 M0R2N6 131 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 NPR1P16066 1061 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 PDE6CP51160 858 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 VAMP7P51809 220 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 PRELPP51888 382 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 ORC1Q13415 861 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 WDR44Q5JSH3 913 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 BSPRYQ5W0U4 402 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 TRIM68Q6AZZ1 485 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 SPOPLQ6IQ16 392 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 ANKS4BQ8N8V4 417 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 RSRC1Q96IZ7 334 aaKnown RBP12.85□□□□□ -0.35
USP1-201ENST00000339950 RMDN3Q96TC7 470 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 SEMA4AQ9H3S1 761 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 SHBGP04278 402 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 LIG4P49917 911 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 USP11P51784 963 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 SESN3P58005 492 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 IFI35P80217 286 aaPredicted RBP12.85□□□□□ -0.35
USP1-201ENST00000339950 SARNPP82979 210 aaKnown RBP12.85□□□□□ -0.35
USP1-201ENST00000339950 TMED2Q15363 201 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 MEI1Q5TIA1 1274 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 SLC47A2Q86VL8 602 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 SYT2Q8N9I0 419 aaPredicted RBP12.85□□□□□ -0.35
USP1-201ENST00000339950 WHAMMQ8TF30 809 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 NAP1L4Q99733 375 aaKnown RBP12.85□□□□□ -0.35
USP1-201ENST00000339950 AGPAT3Q9NRZ7 376 aa12.85□□□□□ -0.35
USP1-201ENST00000339950 EYA4O95677 639 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 STX2P32856 288 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 PPATQ06203 517 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 MTMR1Q13613 665 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 KYNUQ16719 465 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 NEK9Q8TD19 979 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 KCNV2Q8TDN2 545 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 JDP2Q8WYK2 163 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 PBKQ96KB5 322 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 PRMT1Q99873 361 aaKnown RBP12.84□□□□□ -0.35
USP1-201ENST00000339950 DNAJC18Q9H819 358 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 C10orf88Q9H8K7 445 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 ATF5Q9Y2D1 282 aaPredicted RBP12.84□□□□□ -0.35
USP1-201ENST00000339950 PLEKHG2Q9H7P9 1386 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 IGSF9BQ9UPX0 1349 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 POTEJP0CG39 1038 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 SRGAP2CP0DJJ0 459 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 PSMC4P43686 418 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 SWSAP1Q6NVH7 229 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 ARHGEF19Q8IW93 802 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 TMEM143Q96AN5 459 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 KLF6Q99612 283 aaPredicted RBP12.84□□□□□ -0.35
USP1-201ENST00000339950 GLT8D2Q9H1C3 349 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 FAM198AQ9UFP1 575 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 AGTPBP1Q9UPW5 1226 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 PCDHB4Q9Y5E5 795 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 BZW2Q9Y6E2 419 aaKnown RBP12.84□□□□□ -0.35
USP1-201ENST00000339950 MARF1Q9Y4F3 1742 aaKnown RBP12.84□□□□□ -0.35
USP1-201ENST00000339950 GOLGA8RI6L899 631 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 PDXKO00764 312 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 RASGRF2O14827 1237 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 CSDE1O75534 798 aaKnown RBP12.84□□□□□ -0.35
USP1-201ENST00000339950 SPATA31C1P0DKV0 1188 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 TMEM119Q4V9L6 283 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 RC3H1Q5TC82 1133 aaKnown RBP12.84□□□□□ -0.35
USP1-201ENST00000339950 TRIM7Q9C029 511 aa12.84□□□□□ -0.35
USP1-201ENST00000339950 GMNCA6NCL1 334 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 SLITRK3O94933 977 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 CDC25CP30307 473 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 SLC12A3P55017 1021 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 ZNF449Q6P9G9 518 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 CCDC33Q8N5R6 958 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 IL31RAQ8NI17 732 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms