RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 PICK1Q9NRD5 415 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 GGT7Q9UJ14 662 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 ACSL3O95573 720 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 NDUFB10O96000 172 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 SNHG28P0DPA3 235 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 CHN1P15882 459 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 SLC29A2Q14542 456 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 AADACL2Q6P093 401 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 HVCN1Q96D96 273 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 STMN4Q9H169 189 aaPredicted RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 CNOT10Q9H9A5 744 aaKnown RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 FBXO28Q9NVF7 368 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 AJAP1Q9UKB5 411 aaPredicted RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 CCPG1Q9ULG6 757 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 PCDHA2Q9Y5H9 948 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 ALG6Q9Y672 507 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 F8VZ95 297 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 EML1O00423 815 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 KCNJ1P48048 391 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 LRRC14Q15048 493 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 QPCTQ16769 361 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 KIAA1755Q5JYT7 1200 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 HHIPL2Q6UWX4 724 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 JAMLQ86YT9 394 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 FMNL3Q8IVF7 1028 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 CCDC50Q8IVM0 306 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 LRRC57Q8N9N7 239 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 C18orf8Q96DM3 657 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 NCAPGQ9BPX3 1015 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 STK24Q9Y6E0 443 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 FOXN3O00409 490 aaPredicted RBP11.34□□□□□ -0.59
COL3A1-202ENST00000317840 MEIS2O14770 477 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 RASGRF2O14827 1237 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 ATMINO43313 823 aaPredicted RBP11.34□□□□□ -0.59
COL3A1-202ENST00000317840 KRT5P13647 590 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 STAT2P52630 851 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 TRIP13Q15645 432 aaPredicted RBP11.34□□□□□ -0.59
COL3A1-202ENST00000317840 NBPF9Q3BBW0 867 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 PHLDB2Q86SQ0 1253 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 BANK1Q8NDB2 785 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 CHURC1Q8WUH1 139 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 DCAF4Q8WV16 495 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 ZNF577Q9BSK1 485 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 VCPKMTQ9H867 229 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 TAS2R14Q9NYV8 317 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 APEX2Q9UBZ4 518 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 GAKO14976 1311 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 TESPA1A2RU30 521 aaPredicted RBP11.34□□□□□ -0.59
COL3A1-202ENST00000317840 GOLGA8IPA6NC78 632 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 GOLGA8JA6NMD2 632 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 SLC16A3O15427 465 aaKnown RBP11.34□□□□□ -0.59
COL3A1-202ENST00000317840 TRAPPC3O43617 180 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 RPSAP08865 295 aaKnown RBP11.34□□□□□ -0.59
COL3A1-202ENST00000317840 SPATA31C1P0DKV0 1188 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 GABPAQ06546 454 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 ZKSCAN8Q15776 578 aaPredicted RBP11.34□□□□□ -0.59
COL3A1-202ENST00000317840 ARMC9Q7Z3E5 817 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 ARHGEF26Q96DR7 871 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 XPO6Q96QU8 1125 aaKnown RBP11.34□□□□□ -0.59
COL3A1-202ENST00000317840 PLVAPQ9BX97 442 aa11.34□□□□□ -0.59
COL3A1-202ENST00000317840 LARSQ9P2J5 1176 aaKnown RBP11.34□□□□□ -0.59
COL3A1-202ENST00000317840 CNOT8Q9UFF9 292 aaKnown RBP11.34□□□□□ -0.59
COL3A1-202ENST00000317840 ASTN1O14525 1302 aa11.33□□□□□ -0.59
COL3A1-202ENST00000317840 ANKRD62A6NC57 917 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 FSBPO95073 299 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 TMEM253P0C7T8 217 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 PRKCIP41743 596 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 CLK2P49760 499 aaKnown RBP11.33□□□□□ -0.6
COL3A1-202ENST00000317840 RASA3Q14644 834 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 GRIPAP1Q4V328 841 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 CBWD6Q4V339 395 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 CBWD3Q5JTY5 395 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 CBWD5Q5RIA9 395 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 HYIQ5T013 277 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 AGBL2Q5U5Z8 902 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 FOXR2Q6PJQ5 311 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 CCDC137Q6PK04 289 aaKnown RBP11.33□□□□□ -0.6
COL3A1-202ENST00000317840 TAOK1Q7L7X3 1001 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 TBC1D1Q86TI0 1168 aaPredicted RBP11.33□□□□□ -0.6
COL3A1-202ENST00000317840 CNPY4Q8N129 248 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 PRPF38AQ8NAV1 312 aaKnown RBP11.33□□□□□ -0.6
COL3A1-202ENST00000317840 LNX1Q8TBB1 728 aaPredicted RBP11.33□□□□□ -0.6
COL3A1-202ENST00000317840 EHMT1Q9H9B1 1298 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 POLR2MP0CAP2 368 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 KCNV1Q6PIU1 500 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 RPUSD2Q8IZ73 545 aaKnown RBP11.33□□□□□ -0.6
COL3A1-202ENST00000317840 NACC1Q96RE7 527 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 CARD9Q9H257 536 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 ODF2LQ9ULJ1 636 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 EMSYQ7Z589 1322 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 SHBGP04278 402 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 GRM1Q13255 1194 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 BYSLQ13895 437 aaKnown RBP11.33□□□□□ -0.6
COL3A1-202ENST00000317840 RHOT2Q8IXI1 618 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 CCDC63Q8NA47 563 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 SLC20A1Q8WUM9 679 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 ZNF653Q96CK0 615 aa11.33□□□□□ -0.6
COL3A1-202ENST00000317840 ZNF70Q9UC06 446 aaPredicted RBP11.33□□□□□ -0.6
COL3A1-202ENST00000317840 DBR1Q9UK59 544 aaKnown RBP11.33□□□□□ -0.6
COL3A1-202ENST00000317840 FRMD3A2A2Y4 597 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms