RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 LRRC53A6NM62 1247 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 DIAPH2O60879 1101 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 XPAP23025 273 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 USP14P54578 494 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 LLGL1Q15334 1064 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 LRRC41Q15345 812 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 SMCR8Q8TEV9 937 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 H0YIN7 160 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 HNRNPDLO14979 420 aaKnown RBP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 SUPT3HO75486 399 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 DPYDQ12882 1025 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 RASGRP2Q7LDG7 609 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 PDIK1LQ8N165 341 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 LZICQ8WZA0 190 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 SERPINB13Q9UIV8 391 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 AP1B1Q10567 949 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 DNAJC24Q6P3W2 148 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 CPXCR1Q8N123 301 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 BARHL2Q9NY43 387 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 CCDC188H7C350 402 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 IPO5O00410 1097 aaKnown RBP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 SORBS3O60504 671 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 LPXNO60711 386 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 CDK8P49336 464 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 BBS9Q3SYG4 887 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 TAGAPQ8N103 731 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 OSBPL9Q96SU4 736 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 CALN1Q9BXU9 219 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 ARID1BQ8NFD5 2236 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 NBPF26B4DH59 902 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 GFPT2O94808 682 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 MAP4P27816 1152 aaKnown RBP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 POLGP54098 1239 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 ZC3H12BQ5HYM0 836 aaKnown RBP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 DDX42Q86XP3 938 aaKnown RBP eCLIP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 NBPF15Q8N660 670 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 NT5C1BQ96P26 610 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 ADA2Q9NZK5 511 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 PVALEFA0A1B0GWK0 134 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 RASA4BC9J798 803 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 RASA4O43374 803 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 PPP4R4Q6NUP7 873 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 CATSPER1Q8NEC5 780 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 ZFYVE19Q96K21 471 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 DCP1AQ9NPI6 582 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 SYNGAP1Q96PV0 1343 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 STXBP3O00186 592 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 FGGP02679 453 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 UBE3AQ05086 875 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 CCNYQ8ND76 341 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 ENGASEQ8NFI3 743 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 DHX36Q9H2U1 1008 aaKnown RBP10.51□□□□□ -0.73
COL6A3-201ENST00000295550 H0YC42 278 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 SCNN1DP51172 638 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 AP3B2Q13367 1082 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 RINLQ6ZS11 566 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 RYBPQ8N488 228 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-201ENST00000295550 DCAF4Q8WV16 495 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 DIABLOQ9NR28 239 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 KLC4Q9NSK0 619 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 CTDNEP1O95476 244 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 DHX38Q92620 1227 aaKnown RBP10.5□□□□□ -0.73
COL6A3-201ENST00000295550 MXD3Q9BW11 206 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 EFCAB14O75071 495 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 PALMO75781 387 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 WDR47O94967 919 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 FLCNQ8NFG4 579 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 PHF20Q9BVI0 1012 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 ATP11BQ9Y2G3 1177 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 RNF103-CHMP3A0A140T963 221 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 DEAF1O75398 565 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-201ENST00000295550 KITP10721 976 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 KCTD1Q719H9 257 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 PLD3Q8IV08 490 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 CNPY4Q8N129 248 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 ACCSQ96QU6 501 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 NACC1Q96RE7 527 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 WDR11Q9BZH6 1224 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 LRRIQ4A6NIV6 560 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 RFX5P48382 616 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-201ENST00000295550 ANTXR2P58335 489 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 MAGOHP61326 146 aaKnown RBP10.5□□□□□ -0.73
COL6A3-201ENST00000295550 NR1I3Q14994 352 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 ASPSCR1Q9BZE9 553 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 PARVGQ9HBI0 331 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 HACD3Q9P035 362 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 S100A5P33763 92 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 CYP4A11Q02928 519 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 XKR9Q5GH70 373 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 FRA10AC1Q70Z53 315 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 ADPGKQ9BRR6 497 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.5□□□□□ -0.73
COL6A3-201ENST00000295550 ARHGAP26Q9UNA1 814 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 FNDC3AQ9Y2H6 1198 aaKnown RBP10.5□□□□□ -0.73
COL6A3-201ENST00000295550 PDS5AQ29RF7 1337 aaKnown RBP10.5□□□□□ -0.73
COL6A3-201ENST00000295550 SRGAP2O75044 1071 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 TNFAIP1Q13829 316 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 OLFML2BQ68BL8 750 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 SLC30A9Q6PML9 568 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms