RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 SYN2Q92777 582 aaPredicted RBP12.48□□□□□ -0.41
CUX1-202ENST00000292538 POLR3FQ9H1D9 316 aaPredicted RBP12.48□□□□□ -0.41
CUX1-202ENST00000292538 NAGPAQ9UK23 515 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 CALCAP01258 141 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 FAM193AP78312 1265 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 TUBB2AQ13885 445 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 SNRNP35Q16560 246 aaKnown RBP12.48□□□□□ -0.41
CUX1-202ENST00000292538 ARHGEF19Q8IW93 802 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 SYT17Q9BSW7 474 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 PI4K2AQ9BTU6 479 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 TUBB2BQ9BVA1 445 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 CYP26B1Q9NR63 512 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 ANKFY1Q9P2R3 1169 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 F8VZ95 297 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 KCNK3O14649 394 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 PHACTR2O75167 634 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 PPP1R37O75864 691 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 ADRB2P07550 413 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 ADSSP30520 456 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 NF2P35240 595 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 SOX5P35711 763 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 PAFAH1B1P43034 410 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 DPY19L2Q6NUT2 758 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 INTS8Q75QN2 995 aaKnown RBP12.47□□□□□ -0.41
CUX1-202ENST00000292538 TRIM50Q86XT4 487 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 TMEM161BQ8NDZ6 487 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 PLEKHO2Q8TD55 490 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 HDAC7Q8WUI4 952 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 GLG1Q92896 1179 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 IFT74Q96LB3 600 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 C12orf42Q96LP6 360 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 SPATC1LQ9H0A9 340 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 ASCC2Q9H1I8 757 aaPredicted RBP12.47□□□□□ -0.41
CUX1-202ENST00000292538 ZNF302Q9NR11 478 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 DMAC2Q9NW81 257 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 APEX2Q9UBZ4 518 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 DDX3XO00571 662 aaKnown RBP eCLIP12.47□□□□□ -0.411e-8■■□□□ 13.3
CUX1-202ENST00000292538 TBC1D8O95759 1140 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 TNFAIP3P21580 790 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 ACOT2P49753 483 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 MXI1P50539 228 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 GYS2P54840 703 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 CKAP4Q07065 602 aaKnown RBP12.47□□□□□ -0.41
CUX1-202ENST00000292538 CREG2Q8IUH2 290 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 TEX2Q8IWB9 1127 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 ZBTB10Q96DT7 871 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 FAM212AQ96EL1 285 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 TLR10Q9BXR5 811 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 TAS2R14Q9NYV8 317 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 PNMA2Q9UL42 364 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 ADGRA3Q8IWK6 1321 aa12.47□□□□□ -0.41
CUX1-202ENST00000292538 A0A0U1RQG5 324 aaPredicted RBP12.46□□□□□ -0.41
CUX1-202ENST00000292538 TMEM110-MUSTN1A8MSY1 372 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 LCA5LO95447 670 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 OAZ1P54368 228 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 NAB2Q15742 525 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 Q3C1V9 767 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 DPY19L2P1Q6NXN4 242 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 DAAM2Q86T65 1068 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 TXLNBQ8N3L3 684 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 SLC20A1Q8WUM9 679 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 PPP1R16BQ96T49 567 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 TXNRD2Q9NNW7 524 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 OSGEPQ9NPF4 335 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 ANKEF1Q9NU02 776 aa12.46□□□□□ -0.41
CUX1-202ENST00000292538 PSME4Q14997 1843 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 FER1L6Q2WGJ9 1857 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 ERLIN1O75477 346 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 CYP2C8P10632 490 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 LIG4P49917 911 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 GTF2BQ00403 316 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 PRPF4BQ13523 1007 aaKnown RBP12.46□□□□□ -0.42
CUX1-202ENST00000292538 LBX2Q6XYB7 198 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 ADAT2Q7Z6V5 191 aaKnown RBP12.46□□□□□ -0.42
CUX1-202ENST00000292538 PHLDB2Q86SQ0 1253 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 PALB2Q86YC2 1186 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 CDHR1Q96JP9 859 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 LRRC1Q9BTT6 524 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 MKNK1Q9BUB5 465 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 STK33Q9BYT3 514 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 ATP6V0A4Q9HBG4 840 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 ADAMTS5Q9UNA0 930 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 EXOC7Q9UPT5 735 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 SSC5DA1L4H1 1573 aa12.46□□□□□ -0.42
CUX1-202ENST00000292538 ANO9A1A5B4 782 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 SPATA31C2B4DYI2 1134 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 EIF3JO75822 258 aaKnown RBP12.45□□□□□ -0.42
CUX1-202ENST00000292538 GGPS1O95749 300 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 H2AFZP0C0S5 128 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 SSTR3P32745 418 aaPredicted RBP12.45□□□□□ -0.42
CUX1-202ENST00000292538 ALDH5A1P51649 535 aaPredicted RBP12.45□□□□□ -0.42
CUX1-202ENST00000292538 H2AFVQ71UI9 128 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 KLHL7Q8IXQ5 586 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 SMAP1Q8IYB5 467 aaPredicted RBP12.45□□□□□ -0.42
CUX1-202ENST00000292538 TAF4BQ92750 862 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 OPTNQ96CV9 577 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 CDCA5Q96FF9 252 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 ZBTB45Q96K62 511 aaPredicted RBP12.45□□□□□ -0.42
CUX1-202ENST00000292538 TCHPQ9BT92 498 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 TMEM117Q9H0C3 514 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms