RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 NOP53Q9NZM5 478 aaKnown RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 IRS2Q9Y4H2 1338 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 POMCP01189 267 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 HNRNPCP07910 306 aaKnown RBP eCLIP8.38□□□□□ -1.073e-6■■□□□ 11.7
USP3-201ENST00000268049 DDX5P17844 614 aaKnown RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 CYP2C19P33261 490 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 ETF1P62495 437 aaKnown RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 CYP4F22Q6NT55 531 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 SHDQ96IW2 340 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 CALR3Q96L12 384 aaKnown RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 SLC9A2Q9UBY0 812 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 MAGED2Q9UNF1 606 aaPredicted RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 MX2P20592 715 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 APBA1Q02410 837 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 ZNF568Q3ZCX4 644 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 SAMD3Q8N6K7 520 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 C12orf50Q8NA57 414 aaPredicted RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 DEFB118Q96PH6 123 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 APBA2Q99767 749 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 TMEM39BQ9GZU3 492 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 LSG1Q9H089 658 aaKnown RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 SCAF8Q9UPN6 1271 aaKnown RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 RSPH10B2B2RC85 870 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 RSPH10BP0C881 870 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 DLATP10515 647 aaKnown RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 ATICP31939 592 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 DMWDQ09019 674 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 ASIC2Q16515 512 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 PPM1LQ5SGD2 360 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 LGSNQ5TDP6 509 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 CAPRIN2Q6IMN6 1127 aaKnown RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 CCDC197Q8NCU1 140 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 CFAP61Q8NHU2 1237 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 PALMDQ9NP74 551 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 SLC15A5A6NIM6 579 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 ZBTB48P10074 688 aaPredicted RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 STX2P32856 288 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 PEX6Q13608 980 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 PHKG1Q16816 387 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 SLC44A5Q8NCS7 719 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 TRIM11Q96F44 468 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 MRPL4Q9BYD3 311 aaKnown RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 PLEKHA4Q9H4M7 779 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 ZSWIM5Q9P217 1185 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 NCDNQ9UBB6 729 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 ANGPTL3Q9Y5C1 460 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 PCDHB6Q9Y5E3 794 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 LTBP4Q8N2S1 1624 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 HMGB3O15347 200 aaKnown RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 HBP1O60381 514 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 TROVE2P10155 538 aaKnown RBP eCLIP8.37□□□□□ -1.07
USP3-201ENST00000268049 CTNNA1P35221 906 aaKnown RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 ADD1P35611 737 aaKnown RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 CYP2J2P51589 502 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 STAT5BP51692 787 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 STX17P56962 302 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 LONRF2Q1L5Z9 754 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 TRIM48Q8IWZ4 208 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 OXCT2Q9BYC2 517 aaPredicted RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 C11orf49Q9H6J7 331 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 HOMER3Q9NSC5 361 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 GPRC5DQ9NZD1 345 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 TMEM63CQ9P1W3 806 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 DDX41Q9UJV9 622 aaKnown RBP8.37□□□□□ -1.07
USP3-201ENST00000268049 KCNJ14Q9UNX9 436 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 TACC3Q9Y6A5 838 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 ZMYM6O95789 1325 aa8.37□□□□□ -1.07
USP3-201ENST00000268049 GGPS1O95749 300 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 PSMD7P51665 324 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 KIZQ2M2Z5 673 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 CCDC149Q6ZUS6 474 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 RHPN2Q8IUC4 686 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 TMTC1Q8IUR5 882 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 RGL4Q8IZJ4 473 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 NLGN2Q8NFZ4 835 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 ATP2A3Q93084 1043 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 CHMP6Q96FZ7 201 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 PRMT6Q96LA8 375 aaPredicted RBP8.36□□□□□ -1.07
USP3-201ENST00000268049 OLFML3Q9NRN5 406 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.36□□□□□ -1.07
USP3-201ENST00000268049 RGS16O15492 202 aaPredicted RBP8.36□□□□□ -1.07
USP3-201ENST00000268049 CD4P01730 458 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 MAP3K7CLP57077 242 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 ZNF667Q5HYK9 610 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 TTC19Q6DKK2 380 aaPredicted RBP8.36□□□□□ -1.07
USP3-201ENST00000268049 ZNF557Q8N988 423 aaPredicted RBP8.36□□□□□ -1.07
USP3-201ENST00000268049 GPKOWQ92917 476 aaPredicted RBP eCLIP8.36□□□□□ -1.07
USP3-201ENST00000268049 ASIC4Q96FT7 647 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 TNIP3Q96KP6 325 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 NT5C1BQ96P26 610 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 ZNF212Q9UDV6 495 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 ZNF536O15090 1300 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 SYNJ2BP-COX16A0A087WUM0 186 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 ARHGAP42A6NI28 874 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 PTK2Q05397 1052 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 MXD4Q14582 209 aaPredicted RBP8.36□□□□□ -1.07
USP3-201ENST00000268049 MAPRE1Q15691 268 aaKnown RBP8.36□□□□□ -1.07
USP3-201ENST00000268049 SLFNL1Q499Z3 407 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 GRAMD4Q6IC98 578 aa8.36□□□□□ -1.07
USP3-201ENST00000268049 CEP70Q8NHQ1 597 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms