RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 GINM1Q9NU53 330 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 ANAPC7Q9UJX3 599 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 NPR1P16066 1061 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 USP11P51784 963 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 TNFAIP1Q13829 316 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 ALG13Q9NP73 1137 aaKnown RBP12.37□□□□□ -0.43
VPS33A-201ENST00000267199 MAD2L2Q9UI95 211 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 PLAGL2Q9UPG8 496 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 DLG5Q8TDM6 1919 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 KRT1P04264 644 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 SETSIPP0DME0 302 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 MAP3K21Q5TCX8 1036 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 PAPD7Q5XG87 772 aaKnown RBP12.37□□□□□ -0.43
VPS33A-201ENST00000267199 TTI2Q6NXR4 508 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 FLAD1Q8NFF5 587 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 ATP6V0A1Q93050 837 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 SLC4A7Q9Y6M7 1214 aa12.37□□□□□ -0.43
VPS33A-201ENST00000267199 SMIM22K7EJ46 135 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 KDM7AQ6ZMT4 941 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 TXNRD3Q86VQ6 643 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 NBPF3Q9H094 633 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 YY1AP1Q9H869 796 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 H0YCG3 227 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 FTLP02792 175 aaPredicted RBP12.36□□□□□ -0.43
VPS33A-201ENST00000267199 GLI1P08151 1106 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 CDR2Q01850 454 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 TBX2Q13207 712 aaPredicted RBP12.36□□□□□ -0.43
VPS33A-201ENST00000267199 C16orf86Q6ZW13 317 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 TRIM59Q8IWR1 403 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 USP38Q8NB14 1042 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 SH3GL3Q99963 347 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 Q9H521 79 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 KBTBD4Q9NVX7 518 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 MIF4GDA9UHW6 222 aaKnown RBP12.36□□□□□ -0.43
VPS33A-201ENST00000267199 IGF2BP3O00425 579 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS33A-201ENST00000267199 TOM1L1O75674 476 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 NMT1P30419 496 aaKnown RBP12.36□□□□□ -0.43
VPS33A-201ENST00000267199 PADI6Q6TGC4 694 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 PYROXD1Q8WU10 500 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 SMYD3Q9H7B4 428 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 INTS13Q9NVM9 706 aa12.36□□□□□ -0.43
VPS33A-201ENST00000267199 RASSF10A6NK89 507 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 SLC9A1P19634 815 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 LMNB2Q03252 620 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 SLC20A2Q08357 652 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 HADHQ16836 314 aaKnown RBP12.35□□□□□ -0.43
VPS33A-201ENST00000267199 KIAA1755Q5JYT7 1200 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 NT5DC1Q5TFE4 455 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 NAIF1Q69YI7 327 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-201ENST00000267199 XXYLT1Q8NBI6 393 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 CEP70Q8NHQ1 597 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 TBC1D16Q8TBP0 767 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 RAPGEF5Q92565 580 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 EIF2AK1Q9BQI3 630 aaKnown RBP12.35□□□□□ -0.43
VPS33A-201ENST00000267199 TRIM55Q9BYV6 548 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 CNOT8Q9UFF9 292 aaKnown RBP12.35□□□□□ -0.43
VPS33A-201ENST00000267199 USP15Q9Y4E8 981 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-201ENST00000267199 STAM2O75886 525 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 MYBL1P10243 752 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 UCHL3P15374 230 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 PRELPP51888 382 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 PDE1BQ01064 536 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 ANKS1AQ92625 1134 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 DNAJC7Q99615 494 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 ANGPTL2Q9UKU9 493 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 TRPC5Q9UL62 973 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-201ENST00000267199 HAUS5O94927 633 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 TMEM191BP0C7N4 346 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 CHRNA3P32297 505 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 SCTRP47872 440 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 GALCP54803 685 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 KRT81Q14533 505 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 KIF22Q14807 665 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 FRMD5Q7Z6J6 570 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 DNAAF5Q86Y56 855 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 SEPT12Q8IYM1 358 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 LRRC34Q8IZ02 419 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 VGLL2Q8N8G2 317 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 FAM161BQ96MY7 647 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 ARL2BPQ9Y2Y0 163 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 PALM3A6NDB9 673 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-201ENST00000267199 MX2P20592 715 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 KCNJ1P48048 391 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 PMS1P54277 932 aaKnown RBP12.35□□□□□ -0.43
VPS33A-201ENST00000267199 EPHB1P54762 984 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 BRDTQ58F21 947 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-201ENST00000267199 PODNQ7Z5L7 613 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 RFFLQ8WZ73 363 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 RNF25Q96BH1 459 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-201ENST00000267199 ERP27Q96DN0 273 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 C9orf72Q96LT7 481 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 VCPKMTQ9H867 229 aa12.35□□□□□ -0.43
VPS33A-201ENST00000267199 QTRT2Q9H974 415 aaKnown RBP12.35□□□□□ -0.43
VPS33A-201ENST00000267199 PDXKO00764 312 aa12.34□□□□□ -0.43
VPS33A-201ENST00000267199 PPFIA2O75334 1257 aa12.34□□□□□ -0.43
VPS33A-201ENST00000267199 SH3BGRP55822 239 aaPredicted RBP12.34□□□□□ -0.43
VPS33A-201ENST00000267199 GPC5P78333 572 aa12.34□□□□□ -0.43
VPS33A-201ENST00000267199 SLC29A2Q14542 456 aa12.34□□□□□ -0.43
VPS33A-201ENST00000267199 HSP90AA5PQ58FG0 334 aa12.34□□□□□ -0.43
VPS33A-201ENST00000267199 SLC30A9Q6PML9 568 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms