RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 RPUSD2Q8IZ73 545 aaKnown RBP13.66□□□□□ -0.22
LIG1-201ENST00000263274 UBL4BQ8N7F7 174 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 ANKRD42Q8N9B4 389 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 KAT5Q92993 513 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 NAP1L3Q99457 506 aaPredicted RBP13.66□□□□□ -0.22
LIG1-201ENST00000263274 ELAC2Q9BQ52 826 aaKnown RBP13.66□□□□□ -0.22
LIG1-201ENST00000263274 SLITRK3O94933 977 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 MMEP08473 750 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 BCRP11274 1271 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 GAP43P17677 238 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 PRKCIP41743 596 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 DLG4P78352 724 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 HOOK3Q86VS8 718 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 JAMLQ86YT9 394 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 NEK9Q8TD19 979 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 ALG3Q92685 438 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 ERP44Q9BS26 406 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 KLC4Q9NSK0 619 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 APEX2Q9UBZ4 518 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 BAIAP2L1Q9UHR4 511 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 PRR12Q9ULL5 1215 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 ACSL3O95573 720 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 CHN1P15882 459 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 IFI35P80217 286 aaPredicted RBP13.65□□□□□ -0.22
LIG1-201ENST00000263274 FAM133BQ5BKY9 247 aaKnown RBP13.65□□□□□ -0.22
LIG1-201ENST00000263274 SP8Q8IXZ3 490 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 SEMA4AQ9H3S1 761 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 AGPAT3Q9NRZ7 376 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 INTS9Q9NV88 658 aaKnown RBP13.65□□□□□ -0.22
LIG1-201ENST00000263274 MTRF1LQ9UGC7 380 aaKnown RBP13.65□□□□□ -0.22
LIG1-201ENST00000263274 SCAF8Q9UPN6 1271 aaKnown RBP13.65□□□□□ -0.22
LIG1-201ENST00000263274 MYH7BA7E2Y1 1941 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 MYH4Q9Y623 1939 aa13.65□□□□□ -0.22
LIG1-201ENST00000263274 CPP00450 1065 aa13.65□□□□□ -0.23
LIG1-201ENST00000263274 POLR2MP0CAP2 368 aa13.65□□□□□ -0.23
LIG1-201ENST00000263274 HOXA7P31268 230 aaPredicted RBP13.65□□□□□ -0.23
LIG1-201ENST00000263274 SREBF1P36956 1147 aa13.65□□□□□ -0.23
LIG1-201ENST00000263274 KIAA1755Q5JYT7 1200 aa13.65□□□□□ -0.23
LIG1-201ENST00000263274 TMEM179Q6ZVK1 233 aa13.65□□□□□ -0.23
LIG1-201ENST00000263274 LENG9Q96B70 501 aa13.65□□□□□ -0.23
LIG1-201ENST00000263274 TBC1D31Q96DN5 1066 aa13.65□□□□□ -0.23
LIG1-201ENST00000263274 MYO3BQ8WXR4 1341 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 FRMD3A2A2Y4 597 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 CCDC169A6NNP5 214 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 HIP1RO75146 1068 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 ARP10275 920 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 SP4Q02446 784 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 CRY2Q49AN0 593 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 PHLDB3Q6NSJ2 640 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 CPNE8Q86YQ8 564 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 ACER1Q8TDN7 264 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 VEZTQ9HBM0 779 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 SLC40A1Q9NP59 571 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 NYAP2Q9P242 653 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 ASIC3Q9UHC3 531 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 NAV1Q8NEY1 1877 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 COL22A1Q8NFW1 1626 aaPredicted RBP13.64□□□□□ -0.23
LIG1-201ENST00000263274 TMEM150BA6NC51 233 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 TMEM253P0C7T8 217 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 SCP2P22307 547 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 NOVP48745 357 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 MAP2K1Q02750 393 aaPredicted RBP13.64□□□□□ -0.23
LIG1-201ENST00000263274 MIGA2Q7L4E1 593 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 HES6Q96HZ4 224 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 AGPAT1Q99943 283 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 LXNQ9BS40 222 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 WDR18Q9BV38 432 aa13.64□□□□□ -0.23
LIG1-201ENST00000263274 CYP3A7-CYP3A51PA0A087WV96 503 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 H0YGN5 161 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 SLC16A3O15427 465 aaKnown RBP13.63□□□□□ -0.23
LIG1-201ENST00000263274 CALCAP01258 141 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 CLTAP09496 248 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 KRT5P13647 590 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 CYP3A7P24462 503 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 STAT2P52630 851 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 EPC2Q52LR7 807 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 SWT1Q5T5J6 900 aaKnown RBP13.63□□□□□ -0.23
LIG1-201ENST00000263274 HIBCHQ6NVY1 386 aaPredicted RBP13.63□□□□□ -0.23
LIG1-201ENST00000263274 CCDC137Q6PK04 289 aaKnown RBP13.63□□□□□ -0.23
LIG1-201ENST00000263274 EPM2AIP1Q7L775 607 aaPredicted RBP13.63□□□□□ -0.23
LIG1-201ENST00000263274 SLC30A5Q8TAD4 765 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 EPS8L3Q8TE67 593 aaKnown RBP13.63□□□□□ -0.23
LIG1-201ENST00000263274 TCP11Q8WWU5 503 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 NACC1Q96RE7 527 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 PAIP2Q9BPZ3 127 aaKnown RBP13.63□□□□□ -0.23
LIG1-201ENST00000263274 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.63□□□□□ -0.23
LIG1-201ENST00000263274 COG5Q9UP83 839 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 NFS1Q9Y697 457 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 CYP26A1O43174 497 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 TRAPPC3O43617 180 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 SORBS3O60504 671 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 COMTP21964 271 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 CALCOCO2Q13137 446 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 SPRED3Q2MJR0 410 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 C2CD6Q53TS8 623 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 DCAF12L1Q5VU92 463 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 ZNF720Q7Z2F6 126 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 ANKS4BQ8N8V4 417 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 C1orf54Q8WWF1 131 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 MRRFQ96E11 262 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms