RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 GUCA1CO95843 209 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 NPR1P16066 1061 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CCT5P48643 541 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGDIBP52566 201 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 RRAGBQ5VZM2 374 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TUBGCP3Q96CW5 907 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 RMI1Q9H9A7 625 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 HHATLQ9HCP6 504 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 GPCPD1Q9NPB8 672 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SUGT1Q9Y2Z0 365 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 MRPL11Q9Y3B7 192 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ZFC3H1O60293 1989 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TCOF1Q13428 1488 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 IFT140Q96RY7 1462 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 A0A087WUV0 522 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TTI1O43156 1089 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 MICAL2O94851 1124 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 KRT9P35527 623 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SPOPLQ6IQ16 392 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TTBK2Q6IQ55 1244 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SH3KBP1Q96B97 665 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PNMA5Q96PV4 448 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 HAPLN3Q96S86 360 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 MTRQ99707 1265 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 IRX2Q9BZI1 471 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 OPA3Q9H6K4 179 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 THRAP3Q9Y2W1 955 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 MAGED1Q9Y5V3 778 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ELP1O95163 1332 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 IBTKQ9P2D0 1353 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TSPOAP1O95153 1857 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 A0A088AWK7 358 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 IRF6O14896 467 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ZNF10P21506 573 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 STAT6P42226 847 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PRKAA1Q13131 559 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PLD1Q13393 1074 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PICALMQ13492 652 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 AOC3Q16853 763 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 KLHL35Q6PF15 583 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CMTR1Q8N1G2 835 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 USP33Q8TEY7 942 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 GRK7Q8WTQ7 553 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ASZ1Q8WWH4 475 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 RIN2Q8WYP3 895 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PPWD1Q96BP3 646 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PGBD4Q96DM1 585 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SCYL1Q96KG9 808 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 DACH2Q96NX9 599 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 GGT7Q9UJ14 662 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 NUP160Q12769 1436 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 KIF13AQ9H1H9 1805 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 LRG1P02750 347 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ALOX15P16050 662 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 UBA1P22314 1058 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 NPEPPSP55786 919 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 DMPKQ09013 629 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 BFSP2Q13515 415 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 STAT4Q14765 748 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TRADDQ15628 312 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 IER5Q5VY09 327 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TDRPQ86YL5 185 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 AOPEPQ8N6M6 819 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 DTX3Q8N9I9 347 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 FAM98AQ8NCA5 519 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 FATE1Q969F0 183 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ANKRD36BP1Q96IX9 119 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 YIPF2Q9BWQ6 316 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 EMILIN2Q9BXX0 1053 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ACTR5Q9H9F9 607 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGEF10O15013 1369 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 RTCAO00442 366 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PDE8BO95263 885 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CYP7A1P22680 504 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SERPINB1P30740 379 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ZAP70P43403 619 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ALDH6A1Q02252 535 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ILF2Q12905 390 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SLC9A5Q14940 896 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SLC30A9Q6PML9 568 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TMTC3Q6ZXV5 915 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 KRT74Q7RTS7 529 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PALB2Q86YC2 1186 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SVOPQ8N4V2 548 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 DEPTORQ8TB45 409 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 KCNB2Q92953 911 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 GMCL1Q96IK5 515 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 KRT12Q99456 494 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TEKT3Q9BXF9 490 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 BRD8Q9H0E9 1235 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ZNF232Q9UNY5 417 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PCDHB6Q9Y5E3 794 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 NAIPQ13075 1403 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 IGSF9BQ9UPX0 1349 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 KDM3AQ9Y4C1 1321 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 A0A087WZ62 844 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 FAM234BA2RU67 622 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 DNAJA2O60884 412 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SPAG7O75391 227 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SEMA3DO95025 777 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms