RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SPIRE2Q8WWL2 714 aa22.1■■□□□ 1.13
CLN3-250ENST00000636839 ST6GALNAC4Q9H4F1 302 aa22.1■■□□□ 1.13
CLN3-250ENST00000636839 AGPAT3Q9NRZ7 376 aa22.1■■□□□ 1.13
CLN3-250ENST00000636839 TBX20Q9UMR3 447 aa22.1■■□□□ 1.13
CLN3-250ENST00000636839 DNAH12Q6ZR08 3092 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 IGKV6-21A0A0C4DH24 114 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 PES1O00541 588 aaKnown RBP22.09■■□□□ 1.13
CLN3-250ENST00000636839 CALUO43852 315 aaPredicted RBP22.09■■□□□ 1.13
CLN3-250ENST00000636839 AKR1A1P14550 325 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 CCND3P30281 292 aaPredicted RBP22.09■■□□□ 1.13
CLN3-250ENST00000636839 CLCN3P51790 818 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 RTP1P59025 263 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 GOLGA8FQ08AF8 430 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 GOLGA8DPQ0D2H9 430 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 MIIPQ5JXC2 388 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 STXBP4Q6ZWJ1 553 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 METTL13Q8N6R0 699 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 ZSWIM2Q8NEG5 633 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 IFT74Q96LB3 600 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 CTAGE1Q96RT6 745 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 GBP3Q9H0R5 595 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 C17orf75Q9HAS0 396 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 AKAP3O75969 853 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 C22orf31O95567 290 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 KLRC1P26715 233 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 CEP135Q66GS9 1140 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 EFCAB12Q6NXP0 572 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 PPP4R3CPQ6ZMV5 832 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 TRIM44Q96DX7 344 aaPredicted RBP22.09■■□□□ 1.13
CLN3-250ENST00000636839 ACCSQ96QU6 501 aa22.09■■□□□ 1.13
CLN3-250ENST00000636839 LRRIQ4A6NIV6 560 aa22.08■■□□□ 1.13
CLN3-250ENST00000636839 ANKRD63C9JTQ0 380 aa22.08■■□□□ 1.13
CLN3-250ENST00000636839 PGK1P00558 417 aa22.08■■□□□ 1.13
CLN3-250ENST00000636839 CYP2J2P51589 502 aa22.08■■□□□ 1.13
CLN3-250ENST00000636839 CAPSQ13938 189 aa22.08■■□□□ 1.13
CLN3-250ENST00000636839 FAM114A1Q8IWE2 563 aa22.08■■□□□ 1.13
CLN3-250ENST00000636839 ANKRD20A12PQ8NF67 263 aa22.08■■□□□ 1.13
CLN3-250ENST00000636839 AP5M1Q9H0R1 490 aa22.08■■□□□ 1.13
CLN3-250ENST00000636839 PCIF1Q9H4Z3 704 aa22.08■■□□□ 1.13
CLN3-250ENST00000636839 ARHGAP28Q9P2N2 729 aa22.08■■□□□ 1.13
CLN3-250ENST00000636839 ZNF215Q9UL58 517 aaPredicted RBP22.08■■□□□ 1.13
CLN3-250ENST00000636839 UBE4BO95155 1302 aa22.08■■□□□ 1.12
CLN3-250ENST00000636839 CETN3O15182 167 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 MYL3P08590 195 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 PRKAR2AP13861 404 aaKnown RBP22.07■■□□□ 1.12
CLN3-250ENST00000636839 UBXN1Q04323 297 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 MARCH8Q5T0T0 291 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 CEP63Q96MT8 703 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 CBWD1Q9BRT8 395 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 NOC4LQ9BVI4 516 aaKnown RBP22.07■■□□□ 1.12
CLN3-250ENST00000636839 SETD4Q9NVD3 440 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 ADCY3O60266 1144 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 FGFR1OPO95684 399 aaKnown RBP22.07■■□□□ 1.12
CLN3-250ENST00000636839 SRGAP2CP0DJJ0 459 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 PBX1P40424 430 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 LAMTOR4Q0VGL1 99 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 FSCN1Q16658 493 aaKnown RBP22.07■■□□□ 1.12
CLN3-250ENST00000636839 CCDC40Q4G0X9 1142 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 FILIP1LQ4L180 1135 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 ZNF484Q5JVG2 852 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 CCDC155Q8N6L0 562 aa22.07■■□□□ 1.12
CLN3-250ENST00000636839 SUCLA2Q9P2R7 463 aaPredicted RBP22.07■■□□□ 1.12
CLN3-250ENST00000636839 EDN1P05305 212 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 C6orf222P0C671 652 aaPredicted RBP22.06■■□□□ 1.12
CLN3-250ENST00000636839 HIC1Q14526 733 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 KIAA0753Q2KHM9 967 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 SLC39A4Q6P5W5 647 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 PPP1R16BQ96T49 567 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 KCNF1Q9H3M0 494 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 LGALS16A8MUM7 142 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 DUSP11O75319 330 aaKnown RBP22.06■■□□□ 1.12
CLN3-250ENST00000636839 F2P00734 622 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 LRMPQ12912 555 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 PPFIA1Q13136 1202 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 ALCAMQ13740 583 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 GRIK4Q16099 956 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 IER5Q5VY09 327 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 HS2ST1Q7LGA3 356 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 RHPN2Q8IUC4 686 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 TMEM206Q9H813 350 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 DMAC2Q9NW81 257 aa22.06■■□□□ 1.12
CLN3-250ENST00000636839 FKTNO75072 461 aa22.05■■□□□ 1.12
CLN3-250ENST00000636839 TPM3P06753 285 aa22.05■■□□□ 1.12
CLN3-250ENST00000636839 ADSSP30520 456 aa22.05■■□□□ 1.12
CLN3-250ENST00000636839 NAMPTP43490 491 aa22.05■■□□□ 1.12
CLN3-250ENST00000636839 KLK7P49862 253 aa22.05■■□□□ 1.12
CLN3-250ENST00000636839 MAP4K3Q8IVH8 894 aa22.05■■□□□ 1.12
CLN3-250ENST00000636839 RDH13Q8NBN7 331 aa22.05■■□□□ 1.12
CLN3-250ENST00000636839 DEPTORQ8TB45 409 aa22.05■■□□□ 1.12
CLN3-250ENST00000636839 Q9Y3F1 56 aa22.05■■□□□ 1.12
CLN3-250ENST00000636839 TTLL13PA6NNM8 815 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 SEPT4O43236 478 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 CPT1AP50416 773 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 VWA3BQ502W6 1294 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 SPECC1LQ69YQ0 1117 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 ARMCX5Q6P1M9 558 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 MTHFD1LQ6UB35 978 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 RNF149Q8NC42 400 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 RAET1EQ8TD07 263 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 CACTINQ8WUQ7 758 aaKnown RBP22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms