RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 WDR6Q9NNW5 1121 aaKnown RBP16.57■□□□□ 0.24
CLN3-249ENST00000636685 FBXO4Q9UKT5 387 aa16.57■□□□□ 0.24
CLN3-249ENST00000636685 PCDHA6Q9UN73 950 aa16.57■□□□□ 0.24
CLN3-249ENST00000636685 PCDHA8Q9Y5H6 950 aa16.57■□□□□ 0.24
CLN3-249ENST00000636685 A0A0U1RQF3 1178 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 CCDC195A0A1B0GUA6 201 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 DDX39AO00148 427 aaKnown RBP16.56■□□□□ 0.24
CLN3-249ENST00000636685 LAMTOR5O43504 91 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 CCNE2O96020 404 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 GALTP07902 379 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 ATP4AP20648 1035 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 CLCN3P51790 818 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 NLRP11P59045 1033 aaKnown RBP16.56■□□□□ 0.24
CLN3-249ENST00000636685 ABHD15Q6UXT9 468 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 CCDC60Q8IWA6 550 aaPredicted RBP16.56■□□□□ 0.24
CLN3-249ENST00000636685 CMASQ8NFW8 434 aaPredicted RBP16.56■□□□□ 0.24
CLN3-249ENST00000636685 NXPE3Q969Y0 559 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 EMILIN2Q9BXX0 1053 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 NRDE2Q9H7Z3 1164 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 MAN1C1Q9NR34 630 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 PCDHGA2Q9Y5H1 932 aa16.56■□□□□ 0.24
CLN3-249ENST00000636685 PKD1L2Q7Z442 2459 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 SPDYE3A6NKU9 549 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 FGFR4P22455 802 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 STARD6P59095 220 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 LONRF3Q496Y0 759 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 FAM160B1Q5W0V3 765 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 PDXDC2PQ6P474 469 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 TRMT1LQ7Z2T5 733 aaKnown RBP16.55■□□□□ 0.24
CLN3-249ENST00000636685 STAMQ92783 540 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 BORCS6Q96GS4 357 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 SPZ1Q9BXG8 430 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 EPC1Q9H2F5 836 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 ADAMTS10Q9H324 1103 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 AGO4Q9HCK5 861 aaKnown RBP16.55■□□□□ 0.24
CLN3-249ENST00000636685 SLC2A4RGQ9NR83 387 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 WDR81Q562E7 1941 aa16.55■□□□□ 0.24
CLN3-249ENST00000636685 MTCL1Q9Y4B5 1905 aaKnown RBP16.55■□□□□ 0.24
CLN3-249ENST00000636685 RALGAPA1Q6GYQ0 2036 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 INPPL1O15357 1258 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 LILRB3O75022 631 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 HOXB3P14651 431 aaPredicted RBP16.54■□□□□ 0.24
CLN3-249ENST00000636685 EIF4BP23588 611 aaKnown RBP16.54■□□□□ 0.24
CLN3-249ENST00000636685 SLC11A1P49279 550 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 HTR4Q13639 388 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 ZBTB44Q8NCP5 570 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 LPPQ93052 612 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 BCO2Q9BYV7 579 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 GBP3Q9H0R5 595 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 ZNF302Q9NR11 478 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 TBC1D13Q9NVG8 400 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 DNAJB4Q9UDY4 337 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 SEC63Q9UGP8 760 aaKnown RBP16.54■□□□□ 0.24
CLN3-249ENST00000636685 AKT3Q9Y243 479 aa16.54■□□□□ 0.24
CLN3-249ENST00000636685 MTF2Q9Y483 593 aaPredicted RBP16.54■□□□□ 0.24
CLN3-249ENST00000636685 ANHXE9PGG2 379 aa16.53■□□□□ 0.24
CLN3-249ENST00000636685 B4GALT3O60512 393 aa16.53■□□□□ 0.24
CLN3-249ENST00000636685 LILRB5O75023 590 aa16.53■□□□□ 0.24
CLN3-249ENST00000636685 RFPL2O75678 378 aa16.53■□□□□ 0.24
CLN3-249ENST00000636685 SWSAP1Q6NVH7 229 aa16.53■□□□□ 0.24
CLN3-249ENST00000636685 CATIPQ7Z7H3 387 aa16.53■□□□□ 0.24
CLN3-249ENST00000636685 CKAP2LQ8IYA6 745 aa16.53■□□□□ 0.24
CLN3-249ENST00000636685 BBXQ8WY36 941 aaPredicted RBP16.53■□□□□ 0.24
CLN3-249ENST00000636685 SMG7Q92540 1137 aaKnown RBP16.53■□□□□ 0.24
CLN3-249ENST00000636685 SHDQ96IW2 340 aa16.53■□□□□ 0.24
CLN3-249ENST00000636685 ZSCAN32Q9NX65 697 aa16.53■□□□□ 0.24
CLN3-249ENST00000636685 INPP5FQ9Y2H2 1132 aa16.53■□□□□ 0.24
CLN3-249ENST00000636685 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.53■□□□□ 0.24
CLN3-249ENST00000636685 NUMBLQ9Y6R0 609 aa16.53■□□□□ 0.24
CLN3-249ENST00000636685 ZFYVE26Q68DK2 2539 aa16.52■□□□□ 0.24
CLN3-249ENST00000636685 KANSL1LA0AUZ9 987 aa16.52■□□□□ 0.24
CLN3-249ENST00000636685 ERICH2A1L162 156 aa16.52■□□□□ 0.24
CLN3-249ENST00000636685 LAMP2P13473 410 aa16.52■□□□□ 0.24
CLN3-249ENST00000636685 GPC5P78333 572 aa16.52■□□□□ 0.24
CLN3-249ENST00000636685 SNW1Q13573 536 aaKnown RBP16.52■□□□□ 0.24
CLN3-249ENST00000636685 TSSK4Q6SA08 328 aa16.52■□□□□ 0.24
CLN3-249ENST00000636685 LRRC71Q8N4P6 559 aa16.52■□□□□ 0.24
CLN3-249ENST00000636685 MYL10Q9BUA6 226 aa16.52■□□□□ 0.24
CLN3-249ENST00000636685 RPP25Q9BUL9 199 aaKnown RBP16.52■□□□□ 0.24
CLN3-249ENST00000636685 DIAPH3Q9NSV4 1193 aa16.52■□□□□ 0.24
CLN3-249ENST00000636685 ANKRD11Q6UB99 2663 aaPredicted RBP16.52■□□□□ 0.23
CLN3-249ENST00000636685 hCG_1642624A0A1W2PR95 340 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 MEIS3P2A8K0S8 358 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 C2CD2LO14523 706 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 SLC30A4O14863 429 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 TBC1D4O60343 1298 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 CSDE1O75534 798 aaKnown RBP16.51■□□□□ 0.23
CLN3-249ENST00000636685 PLEKHA8P1O95397 391 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 DARSP14868 501 aaKnown RBP16.51■□□□□ 0.23
CLN3-249ENST00000636685 KIF5BP33176 963 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 PHKA2P46019 1235 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 RNASELQ05823 741 aaKnown RBP16.51■□□□□ 0.23
CLN3-249ENST00000636685 SPEM2Q0P670 501 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 TRDNQ13061 729 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 UBXN2BQ14CS0 331 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 NOMO2Q5JPE7 1267 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 EFCAB12Q6NXP0 572 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 GET4Q7L5D6 327 aaPredicted RBP16.51■□□□□ 0.23
CLN3-249ENST00000636685 ZNF280BQ86YH2 543 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 CMTR1Q8N1G2 835 aaKnown RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms