RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 SLC43A3Q8NBI5 491 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 NTPCRQ9BSD7 190 aaKnown RBP22.72■■□□□ 1.23
CLN3-245ENST00000636172 TSPY26PQ9H489 355 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 MAPK8IP1Q9UQF2 711 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 ADGRA3Q8IWK6 1321 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 CCDC169A6NNP5 214 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 SLC16A4O15374 487 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 NCKAP1LP55160 1127 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 CAPSQ13938 189 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 MXD4Q14582 209 aaPredicted RBP22.71■■□□□ 1.23
CLN3-245ENST00000636172 PPP2R5AQ15172 486 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 ZNF720Q7Z2F6 126 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 RHPN2Q8IUC4 686 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 ADSSL1Q8N142 457 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 CTAGE1Q96RT6 745 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 KIFC3Q9BVG8 833 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 KMT5AQ9NQR1 393 aa22.71■■□□□ 1.23
CLN3-245ENST00000636172 K7ENM7 598 aa22.7■■□□□ 1.22
CLN3-245ENST00000636172 GCNT3O95395 438 aa22.7■■□□□ 1.22
CLN3-245ENST00000636172 NAMPTP43490 491 aa22.7■■□□□ 1.22
CLN3-245ENST00000636172 SCFD1Q8WVM8 642 aa22.7■■□□□ 1.22
CLN3-245ENST00000636172 MAP7D2Q96T17 732 aa22.7■■□□□ 1.22
CLN3-245ENST00000636172 STRA6Q9BX79 667 aa22.7■■□□□ 1.22
CLN3-245ENST00000636172 FAM49AQ9H0Q0 323 aaPredicted RBP22.7■■□□□ 1.22
CLN3-245ENST00000636172 AKT3Q9Y243 479 aa22.7■■□□□ 1.22
CLN3-245ENST00000636172 PPP1R37O75864 691 aa22.69■■□□□ 1.22
CLN3-245ENST00000636172 VTNP04004 478 aa22.69■■□□□ 1.22
CLN3-245ENST00000636172 SMTNP53814 917 aa22.69■■□□□ 1.22
CLN3-245ENST00000636172 ZC2HC1CQ53FD0 456 aaPredicted RBP22.69■■□□□ 1.22
CLN3-245ENST00000636172 MYOCDQ8IZQ8 938 aa22.69■■□□□ 1.22
CLN3-245ENST00000636172 GUF1Q8N442 669 aaKnown RBP22.69■■□□□ 1.22
CLN3-245ENST00000636172 TMEM161BQ8NDZ6 487 aa22.69■■□□□ 1.22
CLN3-245ENST00000636172 TMEM106CQ9BVX2 250 aa22.69■■□□□ 1.22
CLN3-245ENST00000636172 ST6GALNAC4Q9H4F1 302 aa22.69■■□□□ 1.22
CLN3-245ENST00000636172 LRRIQ4A6NIV6 560 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 ARVCFO00192 962 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 ASAP2O43150 1006 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 PTGISQ16647 500 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 TAF2Q6P1X5 1199 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 HAUS6Q7Z4H7 955 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 SERINC5Q86VE9 423 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 GAS2L3Q86XJ1 694 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 ANKLE1Q8NAG6 615 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 RNF149Q8NC42 400 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 SLC17A8Q8NDX2 589 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 DIS3LQ8TF46 1054 aaKnown RBP22.68■■□□□ 1.22
CLN3-245ENST00000636172 DNAJB3Q8WWF6 145 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 TRMT13Q9NUP7 481 aaKnown RBP22.68■■□□□ 1.22
CLN3-245ENST00000636172 ARHGAP28Q9P2N2 729 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 DACH1Q9UI36 760 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 KCNG1Q9UIX4 513 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 SIP14410 1827 aa22.68■■□□□ 1.22
CLN3-245ENST00000636172 EIF3DO15371 548 aaKnown RBP eCLIP22.67■■□□□ 1.22
CLN3-245ENST00000636172 PRPF6O94906 941 aaKnown RBP22.67■■□□□ 1.22
CLN3-245ENST00000636172 SRGAP2CP0DJJ0 459 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 COL6A1P12109 1028 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 STIM1Q13586 685 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 BMT2Q1RMZ1 405 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 KLHL10Q6JEL2 608 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 ZNF507Q8TCN5 953 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 ZNF668Q96K58 619 aaPredicted RBP22.67■■□□□ 1.22
CLN3-245ENST00000636172 NLRP4Q96MN2 994 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 SENP6Q9GZR1 1112 aaPredicted RBP22.67■■□□□ 1.22
CLN3-245ENST00000636172 CCDC85CA6NKD9 419 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 HOXD13P35453 343 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 CDK7P50613 346 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 GPC3P51654 580 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 GTF2BQ00403 316 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 KCNA1Q09470 495 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 ALCAMQ13740 583 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 TFDP1Q14186 410 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 CDCA2Q69YH5 1023 aaPredicted RBP22.67■■□□□ 1.22
CLN3-245ENST00000636172 DEPTORQ8TB45 409 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 WNT8BQ93098 351 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 PPP1R16BQ96T49 567 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 SEZ6LQ9BYH1 1024 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 CTNND2Q9UQB3 1225 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 PCDHB13Q9Y5F0 798 aa22.67■■□□□ 1.22
CLN3-245ENST00000636172 UBE4BO95155 1302 aa22.66■■□□□ 1.22
CLN3-245ENST00000636172 DENND3A2RUS2 1198 aa22.66■■□□□ 1.22
CLN3-245ENST00000636172 PPP1R2P41236 205 aa22.66■■□□□ 1.22
CLN3-245ENST00000636172 CT47A1Q5JQC4 288 aaPredicted RBP22.66■■□□□ 1.22
CLN3-245ENST00000636172 STXBP4Q6ZWJ1 553 aa22.66■■□□□ 1.22
CLN3-245ENST00000636172 NELFCDQ8IXH7 590 aa22.66■■□□□ 1.22
CLN3-245ENST00000636172 KCNN1Q92952 543 aa22.66■■□□□ 1.22
CLN3-245ENST00000636172 DHTKD1Q96HY7 919 aaPredicted RBP22.66■■□□□ 1.22
CLN3-245ENST00000636172 MED15Q96RN5 788 aa22.66■■□□□ 1.22
CLN3-245ENST00000636172 NAT10Q9H0A0 1025 aaKnown RBP22.66■■□□□ 1.22
CLN3-245ENST00000636172 TRPV6Q9H1D0 765 aa22.66■■□□□ 1.22
CLN3-245ENST00000636172 H0YCG3 227 aa22.65■■□□□ 1.22
CLN3-245ENST00000636172 PSMA7O14818 248 aa22.65■■□□□ 1.22
CLN3-245ENST00000636172 B4GALT4O60513 344 aa22.65■■□□□ 1.22
CLN3-245ENST00000636172 GPR32O75388 356 aa22.65■■□□□ 1.22
CLN3-245ENST00000636172 ZNF165P49910 485 aa22.65■■□□□ 1.22
CLN3-245ENST00000636172 NLRP11P59045 1033 aaKnown RBP22.65■■□□□ 1.22
CLN3-245ENST00000636172 POU5F1BQ06416 359 aa22.65■■□□□ 1.22
CLN3-245ENST00000636172 TMEM62Q0P6H9 643 aa22.65■■□□□ 1.22
CLN3-245ENST00000636172 PAK1Q13153 545 aa22.65■■□□□ 1.22
CLN3-245ENST00000636172 L1TD1Q5T7N2 865 aaKnown RBP22.65■■□□□ 1.22
CLN3-245ENST00000636172 TAS1R3Q7RTX0 852 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms