RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 RBM23Q86U06 439 aaKnown RBP20.7■□□□□ 0.9
CLN3-241ENST00000635861 PHF20Q9BVI0 1012 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 CCDC194A0A1B0GVG4 234 aa20.69■□□□□ 0.9
CLN3-241ENST00000635861 TBX3O15119 743 aa20.69■□□□□ 0.9
CLN3-241ENST00000635861 ATF7P17544 494 aaPredicted RBP20.69■□□□□ 0.9
CLN3-241ENST00000635861 ERVFC1P60507 584 aa20.69■□□□□ 0.9
CLN3-241ENST00000635861 STK3Q13188 491 aa20.69■□□□□ 0.9
CLN3-241ENST00000635861 PPP2R5CQ13362 524 aa20.69■□□□□ 0.9
CLN3-241ENST00000635861 LRRC55Q6ZSA7 311 aa20.69■□□□□ 0.9
CLN3-241ENST00000635861 ZNF598Q86UK7 904 aaKnown RBP20.69■□□□□ 0.9
CLN3-241ENST00000635861 BARX2Q9UMQ3 279 aaPredicted RBP20.69■□□□□ 0.9
CLN3-241ENST00000635861 TECTAO75443 2155 aa20.68■□□□□ 0.9
CLN3-241ENST00000635861 CBX2Q14781 532 aaPredicted RBP20.68■□□□□ 0.9
CLN3-241ENST00000635861 INF2Q27J81 1249 aa20.68■□□□□ 0.9
CLN3-241ENST00000635861 NEK8Q86SG6 692 aa20.68■□□□□ 0.9
CLN3-241ENST00000635861 RNF135Q8IUD6 432 aa20.68■□□□□ 0.9
CLN3-241ENST00000635861 GJA10Q969M2 543 aa20.68■□□□□ 0.9
CLN3-241ENST00000635861 SLKQ9H2G2 1235 aaPredicted RBP20.68■□□□□ 0.9
CLN3-241ENST00000635861 SPG21Q9NZD8 308 aa20.68■□□□□ 0.9
CLN3-241ENST00000635861 HCSTQ9UBK5 93 aa20.68■□□□□ 0.9
CLN3-241ENST00000635861 LOC730098B7Z3J9 87 aa20.67■□□□□ 0.9
CLN3-241ENST00000635861 QARSP47897 775 aaKnown RBP20.67■□□□□ 0.9
CLN3-241ENST00000635861 ANAPC15P60006 121 aa20.67■□□□□ 0.9
CLN3-241ENST00000635861 SCRN1Q12765 414 aa20.67■□□□□ 0.9
CLN3-241ENST00000635861 KCNC3Q14003 757 aa20.67■□□□□ 0.9
CLN3-241ENST00000635861 CLLU1OSQ5K130 101 aa20.67■□□□□ 0.9
CLN3-241ENST00000635861 AIFM3Q96NN9 605 aa20.67■□□□□ 0.9
CLN3-241ENST00000635861 TCF25Q9BQ70 676 aa20.67■□□□□ 0.9
CLN3-241ENST00000635861 PHF7Q9BWX1 381 aaPredicted RBP20.67■□□□□ 0.9
CLN3-241ENST00000635861 KCNMB3Q9NPA1 279 aa20.67■□□□□ 0.9
CLN3-241ENST00000635861 ENTPD7Q9NQZ7 604 aa20.67■□□□□ 0.9
CLN3-241ENST00000635861 USP15Q9Y4E8 981 aaPredicted RBP20.67■□□□□ 0.9
CLN3-241ENST00000635861 PCDHGC5Q9Y5F6 944 aa20.67■□□□□ 0.9
CLN3-241ENST00000635861 PFKFB2O60825 505 aa20.66■□□□□ 0.9
CLN3-241ENST00000635861 HOXD11P31277 338 aaPredicted RBP20.66■□□□□ 0.9
CLN3-241ENST00000635861 PHKA2P46019 1235 aa20.66■□□□□ 0.9
CLN3-241ENST00000635861 RAB27AP51159 221 aa20.66■□□□□ 0.9
CLN3-241ENST00000635861 DRP2Q13474 957 aa20.66■□□□□ 0.9
CLN3-241ENST00000635861 ANKRD1Q15327 319 aa20.66■□□□□ 0.9
CLN3-241ENST00000635861 LETM2Q2VYF4 491 aa20.66■□□□□ 0.9
CLN3-241ENST00000635861 WASF1Q92558 559 aa20.66■□□□□ 0.9
CLN3-241ENST00000635861 SUCLA2Q9P2R7 463 aaPredicted RBP20.66■□□□□ 0.9
CLN3-241ENST00000635861 VAV3Q9UKW4 847 aa20.66■□□□□ 0.9
CLN3-241ENST00000635861 A0A087WZ62 844 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 DDX11L8A8MPP1 907 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 PER2O15055 1255 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 SLC37A4O43826 429 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 P4HBP07237 508 aaKnown RBP20.65■□□□□ 0.9
CLN3-241ENST00000635861 HOXB8P17481 243 aaPredicted RBP20.65■□□□□ 0.9
CLN3-241ENST00000635861 BMS1Q14692 1282 aaKnown RBP20.65■□□□□ 0.9
CLN3-241ENST00000635861 PLPP4Q5VZY2 271 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 ANO5Q75V66 913 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 SLC39A11Q8N1S5 342 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 RNF169Q8NCN4 708 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 SLC7A3Q8WY07 619 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 SUSD6Q92537 303 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 ZNF668Q96K58 619 aaPredicted RBP20.65■□□□□ 0.9
CLN3-241ENST00000635861 FDXACB1Q9BRP7 624 aaPredicted RBP20.65■□□□□ 0.9
CLN3-241ENST00000635861 LARP6Q9BRS8 491 aaKnown RBP20.65■□□□□ 0.9
CLN3-241ENST00000635861 CYP26B1Q9NR63 512 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 MUTYHQ9UIF7 546 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 KCNJ14Q9UNX9 436 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 WDFY4Q6ZS81 3184 aa20.65■□□□□ 0.9
CLN3-241ENST00000635861 GAS2O43903 313 aaKnown RBP20.64■□□□□ 0.89
CLN3-241ENST00000635861 ZNF623O75123 536 aa20.64■□□□□ 0.89
CLN3-241ENST00000635861 ALDH7A1P49419 539 aaKnown RBP20.64■□□□□ 0.89
CLN3-241ENST00000635861 SMC1AQ14683 1233 aaKnown RBP20.64■□□□□ 0.89
CLN3-241ENST00000635861 TMC7Q7Z402 723 aa20.64■□□□□ 0.89
CLN3-241ENST00000635861 RHPN2Q8IUC4 686 aa20.64■□□□□ 0.89
CLN3-241ENST00000635861 HELQQ8TDG4 1101 aa20.64■□□□□ 0.89
CLN3-241ENST00000635861 EDAQ92838 391 aa20.64■□□□□ 0.89
CLN3-241ENST00000635861 FGFR4P22455 802 aa20.63■□□□□ 0.89
CLN3-241ENST00000635861 RFC5P40937 340 aa20.63■□□□□ 0.89
CLN3-241ENST00000635861 TWF2Q6IBS0 349 aaKnown RBP20.63■□□□□ 0.89
CLN3-241ENST00000635861 ANKRD54Q6NXT1 300 aa20.63■□□□□ 0.89
CLN3-241ENST00000635861 C4orf19Q8IY42 314 aa20.63■□□□□ 0.89
CLN3-241ENST00000635861 VN1R2Q8NFZ6 395 aa20.63■□□□□ 0.89
CLN3-241ENST00000635861 CASP10Q92851 521 aa20.63■□□□□ 0.89
CLN3-241ENST00000635861 MFSD14AQ96MC6 490 aa20.63■□□□□ 0.89
CLN3-241ENST00000635861 STK39Q9UEW8 545 aa20.63■□□□□ 0.89
CLN3-241ENST00000635861 TMEM150BA6NC51 233 aa20.62■□□□□ 0.89
CLN3-241ENST00000635861 EML1O00423 815 aa20.62■□□□□ 0.89
CLN3-241ENST00000635861 CCNT1O60563 726 aaKnown RBP20.62■□□□□ 0.89
CLN3-241ENST00000635861 EIF5BO60841 1220 aaKnown RBP20.62■□□□□ 0.89
CLN3-241ENST00000635861 GIT2Q14161 759 aa20.62■□□□□ 0.89
CLN3-241ENST00000635861 EPHA7Q15375 998 aa20.62■□□□□ 0.89
CLN3-241ENST00000635861 BMP8AQ7Z5Y6 402 aa20.62■□□□□ 0.89
CLN3-241ENST00000635861 SLFN12Q8IYM2 578 aa20.62■□□□□ 0.89
CLN3-241ENST00000635861 PGBD4Q96DM1 585 aa20.62■□□□□ 0.89
CLN3-241ENST00000635861 TMEM169Q96HH4 297 aa20.62■□□□□ 0.89
CLN3-241ENST00000635861 DHX33Q9H6R0 707 aaKnown RBP20.62■□□□□ 0.89
CLN3-241ENST00000635861 PIN4Q9Y237 131 aaKnown RBP20.62■□□□□ 0.89
CLN3-241ENST00000635861 COL4A3BPQ9Y5P4 624 aa20.62■□□□□ 0.89
CLN3-241ENST00000635861 TDRD15B5MCY1 1934 aaKnown RBP20.62■□□□□ 0.89
CLN3-241ENST00000635861 BAG4O95429 457 aaKnown RBP20.61■□□□□ 0.89
CLN3-241ENST00000635861 TECP42680 631 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 GLB1LQ6UWU2 654 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 OTUD6AQ7L8S5 288 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 CATSPER4Q7RTX7 472 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 SRGAP1Q7Z6B7 1085 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms