RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 DAW1Q8N136 415 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 RIT2Q99578 217 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 PAGR1Q9BTK6 254 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 TEKT3Q9BXF9 490 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 NEUROG2Q9H2A3 272 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 OSGEPQ9NPF4 335 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 SLX4Q8IY92 1834 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 IGSF9BQ9UPX0 1349 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 H0YIN7 160 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 PLSCR1O15162 318 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 TRIM49P0CI25 452 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 TRIM49CP0CI26 452 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 ARP10275 920 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 MAPTP10636 758 aaKnown RBP13.85□□□□□ -0.19
LINC00540-203ENST00000631321 LSP1P33241 339 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 HADHBP55084 474 aaKnown RBP13.85□□□□□ -0.19
LINC00540-203ENST00000631321 PLS1Q14651 629 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 TCEAL1Q15170 157 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 PPP2R5EQ16537 467 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 PTPROQ16827 1216 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 CEP85LQ5SZL2 805 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 TTC19Q6DKK2 380 aaPredicted RBP13.85□□□□□ -0.19
LINC00540-203ENST00000631321 CCDC174Q6PII3 467 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 CTNNBL1Q8WYA6 563 aaPredicted RBP13.85□□□□□ -0.19
LINC00540-203ENST00000631321 VTI1AQ96AJ9 217 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 LXNQ9BS40 222 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 EPN3Q9H201 632 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 CARD9Q9H257 536 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 PPP1R9AQ9ULJ8 1098 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 FAM169AQ9Y6X4 670 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 ANKRD62A6NC57 917 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 ATP1A2P50993 1020 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 FAM160B2Q86V87 743 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 DDX42Q86XP3 938 aaKnown RBP eCLIP13.85□□□□□ -0.19
LINC00540-203ENST00000631321 FAM114A2Q9NRY5 505 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 AMACRQ9UHK6 382 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 ZBTB21Q9ULJ3 1066 aa13.85□□□□□ -0.19
LINC00540-203ENST00000631321 ARHGEF35A5YM69 484 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 P4HA2O15460 535 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 HIP1RO75146 1068 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 BCRP11274 1271 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 MDH1P40925 334 aaKnown RBP13.84□□□□□ -0.19
LINC00540-203ENST00000631321 BIRC3Q13489 604 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 ALCAMQ13740 583 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 DCAF12L1Q5VU92 463 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 PHLDB3Q6NSJ2 640 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 B4GALNT4Q76KP1 1039 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 SPATS2Q86XZ4 545 aaKnown RBP13.84□□□□□ -0.19
LINC00540-203ENST00000631321 C12orf56Q8IXR9 622 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 BANK1Q8NDB2 785 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 VCPKMTQ9H867 229 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 SPDYE2BA6NHP3 402 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 GOLGA6L10A6NI86 522 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 YDJCA8MPS7 323 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 ANKRD65E5RJM6 399 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 IPO5O00410 1097 aaKnown RBP13.84□□□□□ -0.19
LINC00540-203ENST00000631321 NDUFAB1O14561 156 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 DAPK3O43293 454 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 EXOC3O60645 756 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 MYZAPP0CAP1 466 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 SPDYE6P0CI01 402 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 TNFAIP3P21580 790 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 PTENP60484 403 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 UBXN2AP68543 259 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 ZNF844Q08AG5 666 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 CLUL1Q15846 466 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 PTGISQ16647 500 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 SPDYCQ5MJ68 293 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 TADA2BQ86TJ2 420 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 FAM151AQ8WW52 585 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 ARHGEF26Q96DR7 871 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 NAP1L3Q99457 506 aaPredicted RBP13.84□□□□□ -0.19
LINC00540-203ENST00000631321 MXRA8Q9BRK3 442 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 TMOD2Q9NZR1 351 aa13.84□□□□□ -0.19
LINC00540-203ENST00000631321 TTI1O43156 1089 aa13.83□□□□□ -0.19
LINC00540-203ENST00000631321 FGGP02679 453 aa13.83□□□□□ -0.19
LINC00540-203ENST00000631321 HSD17B4P51659 736 aa13.83□□□□□ -0.19
LINC00540-203ENST00000631321 MCCD1P59942 119 aaPredicted RBP13.83□□□□□ -0.19
LINC00540-203ENST00000631321 RUFY4Q6ZNE9 571 aa13.83□□□□□ -0.19
LINC00540-203ENST00000631321 INTS8Q75QN2 995 aaKnown RBP13.83□□□□□ -0.19
LINC00540-203ENST00000631321 TMC3Q7Z5M5 1100 aa13.83□□□□□ -0.19
LINC00540-203ENST00000631321 ARFGAP2Q8N6H7 521 aa13.83□□□□□ -0.19
LINC00540-203ENST00000631321 CNKSR1Q969H4 720 aa13.83□□□□□ -0.19
LINC00540-203ENST00000631321 AGPAT1Q99943 283 aa13.83□□□□□ -0.19
LINC00540-203ENST00000631321 TAS2R14Q9NYV8 317 aa13.83□□□□□ -0.19
LINC00540-203ENST00000631321 FEM1BQ9UK73 627 aa13.83□□□□□ -0.19
LINC00540-203ENST00000631321 USP20Q9Y2K6 914 aa13.83□□□□□ -0.19
LINC00540-203ENST00000631321 UTP11Q9Y3A2 253 aaKnown RBP13.83□□□□□ -0.19
LINC00540-203ENST00000631321 RPTORQ8N122 1335 aa13.83□□□□□ -0.2
LINC00540-203ENST00000631321 SMCHD1A6NHR9 2005 aa13.83□□□□□ -0.2
LINC00540-203ENST00000631321 FOXN3O00409 490 aaPredicted RBP13.83□□□□□ -0.2
LINC00540-203ENST00000631321 PMM2O15305 246 aa13.83□□□□□ -0.2
LINC00540-203ENST00000631321 CTNNA1P35221 906 aaKnown RBP13.83□□□□□ -0.2
LINC00540-203ENST00000631321 GUCY1A3Q02108 690 aa13.83□□□□□ -0.2
LINC00540-203ENST00000631321 AGBL2Q5U5Z8 902 aa13.83□□□□□ -0.2
LINC00540-203ENST00000631321 NIPA1Q7RTP0 329 aa13.83□□□□□ -0.2
LINC00540-203ENST00000631321 LDHDQ86WU2 507 aa13.83□□□□□ -0.2
LINC00540-203ENST00000631321 RHOT2Q8IXI1 618 aa13.83□□□□□ -0.2
LINC00540-203ENST00000631321 ATP8B4Q8TF62 1192 aa13.83□□□□□ -0.2
LINC00540-203ENST00000631321 TXLNGYQ9BZA5 131 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms