RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RAD51AP2Q09MP3 1159 aa21.16■□□□□ 0.98
SQSTM1-216ENST00000626660 PAK2Q13177 524 aa21.16■□□□□ 0.98
SQSTM1-216ENST00000626660 GPNMBQ14956 572 aa21.16■□□□□ 0.98
SQSTM1-216ENST00000626660 E2F4Q16254 413 aa21.16■□□□□ 0.98
SQSTM1-216ENST00000626660 CNKSR3Q6P9H4 555 aa21.16■□□□□ 0.98
SQSTM1-216ENST00000626660 RNF149Q8NC42 400 aa21.16■□□□□ 0.98
SQSTM1-216ENST00000626660 FDXACB1Q9BRP7 624 aaPredicted RBP21.16■□□□□ 0.98
SQSTM1-216ENST00000626660 IFIH1Q9BYX4 1025 aaKnown RBP21.16■□□□□ 0.98
SQSTM1-216ENST00000626660 USP25Q9UHP3 1055 aa21.16■□□□□ 0.98
SQSTM1-216ENST00000626660 LRRIQ4A6NIV6 560 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 EIF4BP23588 611 aaKnown RBP21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 CD52P31358 61 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 BMP8BP34820 402 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 SYKP43405 635 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 EPHB4P54760 987 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 AMPD3Q01432 767 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 POU5F1BQ06416 359 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 CAPSQ13938 189 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 PLEKHG4Q58EX7 1191 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 ZNF365Q70YC5 407 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 SRGAP1Q7Z6B7 1085 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 CEP57L1Q8IYX8 460 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 APBB2Q92870 758 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 MTIF3Q9H2K0 278 aaKnown RBP21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 ODF2LQ9ULJ1 636 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 HPSEQ9Y251 543 aa21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 NOC2LQ9Y3T9 749 aaKnown RBP21.15■□□□□ 0.98
SQSTM1-216ENST00000626660 FAM237AA0A1B0GTK4 181 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 GPR182O15218 404 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 TBCAO75347 108 aaKnown RBP21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 NAMPTP43490 491 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 ARSHQ5FYA8 562 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 TMEM240Q5SV17 173 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 C16orf59Q7L2K0 433 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 TMEM87AQ8NBN3 555 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 DBF4BQ8NFT6 615 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 TMEM40Q8WWA1 233 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 GBP4Q96PP9 640 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 REEP2Q9BRK0 252 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 TNMDQ9H2S6 317 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 C17orf75Q9HAS0 396 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 POLD4Q9HCU8 107 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 KCNG1Q9UIX4 513 aa21.14■□□□□ 0.97
SQSTM1-216ENST00000626660 NPHP3-ACAD11A0A0J9YXS1 232 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 EFCAB14O75071 495 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 FAM13AO94988 1023 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 SFPQP23246 707 aaKnown RBP eCLIP21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 NDUFA8P51970 172 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 NFX1Q12986 1120 aaKnown RBP21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 DMP1Q13316 513 aaPredicted RBP21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 IKBKEQ14164 716 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 CLEC17AQ6ZS10 378 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 FAM43BQ6ZT52 329 aaPredicted RBP21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 ZBTB8OSQ8IWT0 167 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 DAW1Q8N136 415 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 DEPTORQ8TB45 409 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 VWCEQ96DN2 955 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 OSBPL7Q9BZF2 842 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 C2orf40Q9H1Z8 148 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 AGO3Q9H9G7 860 aaKnown RBP21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 IFT122Q9HBG6 1241 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 PADI3Q9ULW8 664 aa21.13■□□□□ 0.97
SQSTM1-216ENST00000626660 MYMKA6NI61 221 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 BAIAP3O94812 1187 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 SLFN14P0C7P3 912 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 PTENP60484 403 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 CACNB1Q02641 598 aaPredicted RBP21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 MAPK7Q13164 816 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 GIT2Q14161 759 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 OTOP2Q7RTS6 562 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 FAM228AQ86W67 206 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 BSNDQ8WZ55 320 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 DDX12PQ92771 950 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 FTHL17Q9BXU8 183 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 NFKBIZQ9BYH8 718 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 GOLPH3LQ9H4A5 285 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 ZHX3Q9H4I2 956 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 ERVK-5Q9HDB9 667 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 KBTBD4Q9NVX7 518 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 LARSQ9P2J5 1176 aaKnown RBP21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 SERTAD1Q9UHV2 236 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 ST3GAL5Q9UNP4 418 aa21.12■□□□□ 0.97
SQSTM1-216ENST00000626660 MICAL3Q7RTP6 2002 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 ABHD14A-ACY1A0A1B0GW23 586 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 CCDC169A6NNP5 214 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 ZBBXA8MT70 800 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 INO80B-WBP1J3KQ70 363 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 PLS3P13797 630 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 SMTNP53814 917 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 PEX3P56589 373 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 DYMQ7RTS9 669 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 CATSPER4Q7RTX7 472 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 IFNLR1Q8IU57 520 aaPredicted RBP21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 SLC17A8Q8NDX2 589 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 HERVK_113Q902F9 699 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 CCDC34Q96HJ3 373 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 RNPC3Q96LT9 517 aaKnown RBP21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 PARVGQ9HBI0 331 aa21.11■□□□□ 0.97
SQSTM1-216ENST00000626660 SFI1A8K8P3 1242 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms