RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 SEPT9Q9UHD8 586 aaPredicted RBP10.78□□□□□ -0.68
VRK3-224ENST00000601849 SORCS3Q9UPU3 1222 aa10.78□□□□□ -0.68
VRK3-224ENST00000601849 HCFC2Q9Y5Z7 792 aa10.78□□□□□ -0.68
VRK3-224ENST00000601849 C2orf71A6NGG8 1288 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 DDX11L8A8MPP1 907 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 CPLX1O14810 134 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 MSH4O15457 936 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 MARCH6O60337 910 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 REC8O95072 547 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 IFNAR1P17181 557 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 RAB27AP51159 221 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 POLGP54098 1239 aaPredicted RBP10.77□□□□□ -0.69
VRK3-224ENST00000601849 RBM10P98175 930 aaKnown RBP10.77□□□□□ -0.69
VRK3-224ENST00000601849 SSRP1Q08945 709 aaKnown RBP10.77□□□□□ -0.69
VRK3-224ENST00000601849 NCBP1Q09161 790 aaKnown RBP10.77□□□□□ -0.69
VRK3-224ENST00000601849 MTERF2Q49AM1 385 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 GALNT17Q6IS24 598 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 SYCE2Q6PIF2 218 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 ELMSAN1Q6PJG2 1045 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 ZNF410Q86VK4 478 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 SLC39A11Q8N1S5 342 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 FBXL16Q8N461 479 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 KREMEN2Q8NCW0 462 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 PRSS33Q8NF86 280 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 VN1R2Q8NFZ6 395 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 URGCPQ8TCY9 931 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 EMILIN2Q9BXX0 1053 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 NIFKQ9BYG3 293 aaKnown RBP10.77□□□□□ -0.69
VRK3-224ENST00000601849 SLKQ9H2G2 1235 aaPredicted RBP10.77□□□□□ -0.69
VRK3-224ENST00000601849 MFSD1Q9H3U5 465 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 SUCLA2Q9P2R7 463 aaPredicted RBP10.77□□□□□ -0.69
VRK3-224ENST00000601849 DPP7Q9UHL4 492 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 DBR1Q9UK59 544 aaKnown RBP10.77□□□□□ -0.69
VRK3-224ENST00000601849 USP34Q70CQ2 3546 aa10.77□□□□□ -0.69
VRK3-224ENST00000601849 LOXHD1Q8IVV2 1947 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.76□□□□□ -0.69
VRK3-224ENST00000601849 ZNF862O60290 1169 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 CLASP2O75122 1294 aaKnown RBP10.76□□□□□ -0.69
VRK3-224ENST00000601849 ZC3H11AO75152 810 aaKnown RBP eCLIP10.76□□□□□ -0.69
VRK3-224ENST00000601849 ALDH2P05091 517 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 XBP1P17861 261 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 RPS6KB1P23443 525 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 PBX3P40426 434 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 PHKA2P46019 1235 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 Q4G0T1 1027 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 CLLU1OSQ5K130 101 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 CATSPER4Q7RTX7 472 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 CABP7Q86V35 215 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 RHPN2Q8IUC4 686 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 FAM177A1Q8N128 213 aaPredicted RBP10.76□□□□□ -0.69
VRK3-224ENST00000601849 VPS52Q8N1B4 723 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 LINC01465Q8N7H1 131 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 TDRD5Q8NAT2 981 aaKnown RBP10.76□□□□□ -0.69
VRK3-224ENST00000601849 TBCKQ8TEA7 893 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 SLC7A3Q8WY07 619 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 SLC5A5Q92911 643 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 ASIC4Q96FT7 647 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 ZNF668Q96K58 619 aaPredicted RBP10.76□□□□□ -0.69
VRK3-224ENST00000601849 TRAIPQ9BWF2 469 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 UNC45AQ9H3U1 944 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 VPS54Q9P1Q0 977 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 KANSL3Q9P2N6 904 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 HCSTQ9UBK5 93 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 PCDHA4Q9UN74 947 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 PIN4Q9Y237 131 aaKnown RBP10.76□□□□□ -0.69
VRK3-224ENST00000601849 USTQ9Y2C2 406 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 SSX2IPQ9Y2D8 614 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 FNDC1Q4ZHG4 1894 aaPredicted RBP10.76□□□□□ -0.69
VRK3-224ENST00000601849 PLXNA4Q9HCM2 1894 aa10.76□□□□□ -0.69
VRK3-224ENST00000601849 KIAA1671Q9BY89 1806 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 A0A087WZ62 844 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 NT5C1B-RDH14C9J2C7 533 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 DEXIO95424 95 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 CPA1P15085 419 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 FGFR4P22455 802 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 SP100P23497 879 aaPredicted RBP10.75□□□□□ -0.69
VRK3-224ENST00000601849 HSPA4P34932 840 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 PSMC5P62195 406 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 CCT2P78371 535 aaKnown RBP10.75□□□□□ -0.69
VRK3-224ENST00000601849 TARBP2Q15633 366 aaKnown RBP10.75□□□□□ -0.69
VRK3-224ENST00000601849 NOMO2Q5JPE7 1267 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 OTUD6AQ7L8S5 288 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 DDX53Q86TM3 631 aaKnown RBP10.75□□□□□ -0.69
VRK3-224ENST00000601849 ZNF598Q86UK7 904 aaKnown RBP10.75□□□□□ -0.69
VRK3-224ENST00000601849 ZDHHC14Q8IZN3 488 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 LENG9Q96B70 501 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 NAP1L4Q99733 375 aaKnown RBP10.75□□□□□ -0.69
VRK3-224ENST00000601849 FDXACB1Q9BRP7 624 aaPredicted RBP10.75□□□□□ -0.69
VRK3-224ENST00000601849 UBN1Q9NPG3 1134 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 FAM105AQ9NUU6 356 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 PPME1Q9Y570 386 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 SNX14Q9Y5W7 946 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 IRAK3Q9Y616 596 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 MYH9P35579 1960 aaKnown RBP10.75□□□□□ -0.69
VRK3-224ENST00000601849 EVPLQ92817 2033 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 NID2Q14112 1375 aa10.75□□□□□ -0.69
VRK3-224ENST00000601849 ATG2AQ2TAZ0 1938 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 CYP3A7-CYP3A51PA0A087WV96 503 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 ASAP2O43150 1006 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 GFRA3O60609 400 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms